Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2580 ATGGAGATATCTTTGTTGAAGGTTCTATCTGATGCAATATCCTCATTTTTGCATTTATCATTTTCTGAAAAGATGAAGTTAGAACCTGTATCAAAATATTATCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCAATTATTGATACTACTGATTTTTCAGATATAGCTTCTAATGAAGTGCTTAGGAAACTATTTGAGGAACTTTGTCCGGCAGTTGATGAGTTGAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGCAAGTTTTACTTTGTTAATCAAGTTGATCTCTTAGTATCAACAATTCAGGCCTTGGGTGTCAGCATTTTACAACAGCTGAAGGATTCGCCACAATGTCTCCCTGATAATTTGGGAAATGAAACATCATCAACCATTAAAAAAGCTATTTTGGAACAACTGGAAGGTGTAGGACCAAGTTTGGAGGTCTTGGAAAACATTGCTGACCACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTATCCCTTGAAAAGTTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATATTGATAAAATGATATCAGTTGTGAATCGAATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGTTCTATCCCAGTGCCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCGGTCATTGTGGCATCTGGACAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGTCTTACTATTTGTCCAAAGACACGTCAGACTCTGGTGCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTGAAGCTCCCTGATCCCATTAAGTACAAAAACTTAAATCAACCATCTCCCTTTCATGGATCTATGGAGTCTGGTTTGATCAAGAATTCACCTGCTATAACTAGTGGTGAACCCCACCAAGAACGAACATCAACATTGCATCACTCTTCTAATCCAGGTGGTTCTTTAAATGGCACGGTTCATGAGCCATATGCGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCCAGCTCACATGAAGGGAGCGTCGATTCAGTTGGTGAATCATTAACATCCCCATCCAGAAATGCCTTGAGCTCAGAACAATCTCAAGCTGATATTAGAACTACTGATATCAACAATACCCTGCTGTCAACCAGTTCAGTCCACAGTCGGGATGCTTTTGGTGAATTGAATGCAGGGCAAGATGCTATTCCCTTGCCAACTCGGCATAGAGAATCTGAGTTTTCATCCCAATTAGCAGTGCCAAGGTCTCGAAGCCAAACTATATGGCAACGGTCATCCGAGTGGCTTGTTCCTAGGGTAGTGTCTATTGAAACAAGAGCTGCTCTTTCTGCTGCTGAAACCCAGGTTCAGAAATTAGTGGAGCAGCTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCTGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCGATTAGCCTATTAGTTGATTTACTGCAATCAACTGATTCTATGATCCAGGAAAATTCTGTTACAGCACTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTACTTAAGACAGGGAGTTCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTTACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGACTTGTTGGGGAACGGAAGCCCTAGGGGGAAGAAAGATGCTGCCACTGCCTTGTTTAATCTTTCCATATTTCATGAAAACAAGGACCGGATTGTGCAAGCTGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTCGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCAATTGGTGATGAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGTTCTGTGAGAGGAAAGGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCATACAATCACAGATATTTAAACAAGGTGCTCCAAGAAGGAGCCGTGCCACCTTTGGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCGCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGGTGGGAGAGCTTGA 2310 0.4216 MEISLLKVLSDAISSFLHLSFSEKMKLEPVSKYYQKAEKMLKLLKPIIDTTDFSDIASNEVLRKLFEELCPAVDELRELILNWHPLSSKFYFVNQVDLLVSTIQALGVSILQQLKDSPQCLPDNLGNETSSTIKKAILEQLEGVGPSLEVLENIADHLGLRSNQEVLIEAVSLEKLKEKAEQIENTSEVEYIDKMISVVNRMHEHLVMLKQAQSSIPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTICPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPIKYKNLNQPSPFHGSMESGLIKNSPAITSGEPHQERTSTLHHSSNPGGSLNGTVHEPYADLERISHTGSDDGSASSHEGSVDSVGESLTSPSRNALSSEQSQADIRTTDINNTLLSTSSVHSRDAFGELNAGQDAIPLPTRHRESEFSSQLAVPRSRSQTIWQRSSEWLVPRVVSIETRAALSAAETQVQKLVEQLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSTDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSSEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGSPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDEGGIPVLVEVIELGSVRGKENAAAALLHLCSYNHRYLNKVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGGGRA* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2580 769 Gene3D - 599 764 IPR011989 -
Pvu8g2580 769 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Pvu8g2580 769 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Pvu8g2580 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 567 609 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 720 760 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 556 596 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 638 677 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 515 555 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 678 718 IPR000225 GO:0005515
Pvu8g2580 769 SMART arm_5 597 637 IPR000225 GO:0005515
Pvu8g2580 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 608 650 IPR000225 GO:0005515
Pvu8g2580 769 PANTHER U BOX DOMAIN-CONTAINING 459 765 - -
Pvu8g2580 769 PANTHER U BOX DOMAIN-CONTAINING 9 333 - -
Pvu8g2580 769 Coils Coil 163 193 - -
Pvu8g2580 769 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Pvu8g2580 769 MobiDBLite consensus disorder prediction 311 404 - -
Pvu8g2580 769 MobiDBLite consensus disorder prediction 318 348 - -
Pvu8g2580 769 MobiDBLite consensus disorder prediction 365 404 - -
Pvu8g2580 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 295 IPR013083 -
Pvu8g2580 769 SUPERFAMILY ARM repeat 485 758 IPR016024 -
Pvu8g2580 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 459 765 - -
Pvu8g2580 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 333 - -
Pvu8g2580 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 649 690 IPR000225 GO:0005515
Pvu8g2580 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Pvu8g2580 769 CDD RING-Ubox_PUB 224 266 IPR045210 -
Pvu8g2580 769 Pfam Armadillo/beta-catenin-like repeat 517 554 IPR000225 GO:0005515
Pvu8g2580 769 Pfam Armadillo/beta-catenin-like repeat 598 636 IPR000225 GO:0005515
Pvu8g2580 769 Pfam Armadillo/beta-catenin-like repeat 640 676 IPR000225 GO:0005515
Pvu8g2580 769 Pfam Armadillo/beta-catenin-like repeat 556 595 IPR000225 GO:0005515
Pvu8g2580 769 SUPERFAMILY RING/U-box 209 297 - -
Pvu8g2580 769 Gene3D - 470 598 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2580 Pvu-Chr8 56410335 56417784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2580 180 769 U-box Gene Family AT2G23140 59.561 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2580 - - gmx:100777715 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0795 6 19501477 19511151 Pvu8g2580 8 56410335 56417784 PCT