Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2577 ATGAAACAAAATCTTTCTCCCTCTCAACACACTTTGATCAAGAAAATCAAAAGGCATGTTTGGACATCAAGAGATAGATTAGATGAGATAACAAAAATCAGAGCAGAGGTAGAAGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAATTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTCTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTTCCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACCTGAGGCTAAGAGATCCTGTATACGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGGGAAGAGATACTAAAATACAAATATAGAGAAGCTGCGAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATATCAGCAGCAATTCCCGCAAACTCACAACCACAAGGTCTTTCTCAACTTCCTCCTCCTCCTCTACCAAAACAATTGCCTGCTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCACCACTGAAAATGTCCCATACTTTGTTTAG 786 0.4186 MKQNLSPSQHTLIKKIKRHVWTSRDRLDEITKIRAEVEASSQMGRKHFYGPIPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIREEILKYKYREAASLISSNHAALVSSADAISAAIPANSQPQGLSQLPPPPLPKQLPAPPLKPLPSPSVILSSFSSSSTSSVYTPKSSMSLGSISTTENVPYFV* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2577 261 ProSiteProfiles LOB domain profile. 61 162 IPR004883 -
Pvu8g2577 261 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 260 - -
Pvu8g2577 261 Coils Coil 141 168 - -
Pvu8g2577 261 Pfam Lateral organ boundaries (LOB) domain 62 158 IPR004883 -
Pvu8g2577 261 MobiDBLite consensus disorder prediction 196 216 - -
Pvu8g2577 261 PANTHER LOB DOMAIN PROTEIN 44 260 - -
Pvu8g2577 261 MobiDBLite consensus disorder prediction 200 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2577 Pvu-Chr8 56397459 56398768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2577 43 175 AS2 family AT2G30340 79.104 1.71e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g2577 LOB 2.7e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2577 8 56397459 56398768 Pvu8g2577 8 56397459 56398768 ECH