Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2566 ATGCAATCATTTTTTGTCCTACTTATTCTCATTTTTATCCACGTTAACATGCACTTGAAGACTGCCTTTGCTGACTATGGCGGTTGGCAGGGTGGTCATGCTACTTTCTATGGCGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGCTATGGGAATTTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCATGTTTTGAAATGAGGTGTGATGATGACCCAAGATGGTGCAAGGCTGGCACCATTGTTGTCACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGCCAAACAATAACGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTTCAAATTGCTCAATATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGGGTGTCTTGTGTGAAAAAGGGGGGAATAAGGTTCACAATTAATGGACATTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTCTCCATCAAAGGGTCCAGAACTAGCTGGCAACCTATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCAACTCACCGCCAGTGACGGTAGAACTCTGACAGCCTTCAACGTGGCACCAGATAACTGGCAGTTTGGTCAGACCTTCCAAGGGAGTCAATTTTAG 756 0.4656 MQSFFVLLILIFIHVNMHLKTAFADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCDDDPRWCKAGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVSCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTLTAFNVAPDNWQFGQTFQGSQF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2566 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Pvu8g2566 251 SUPERFAMILY Barwin-like endoglucanases 8 177 IPR036908 -
Pvu8g2566 251 Gene3D - 158 251 IPR036749 -
Pvu8g2566 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Pvu8g2566 251 PANTHER EXPANSIN 6 251 - -
Pvu8g2566 251 PANTHER EXPANSIN-A15 6 251 IPR002963 GO:0009664
Pvu8g2566 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Pvu8g2566 251 SMART dpbb_1 64 149 IPR007112 -
Pvu8g2566 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Pvu8g2566 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Pvu8g2566 251 Pfam Lytic transglycolase 64 148 IPR009009 -
Pvu8g2566 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Pvu8g2566 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Pvu8g2566 251 Gene3D - 13 154 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2566 Pvu-Chr8 56264486 56266809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2566 3 251 Expansin Gene Family AT2G40610 79.200 2.90e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2566 - - gmx:100815150 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2566 8 56264486 56266809 Pvu8g2566 8 56264486 56266809 ECH
Pvu8g2566 8 56264486 56266809 Pvu7g1677 7 39251681 39254705 ECH
Pvu6g0807 6 19594514 19596982 Pvu8g2566 8 56264486 56266809 ECH
Pvu6g0807 6 19594514 19596982 Pvu8g2566 8 56264486 56266809 PCT