Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2561 ATGGAGGTCGAGGTTTGCATGAACGGTGCGTGCAAGAATGGCTACGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCCAGGCTCTGCGATAAGTGCGGATCTGCATATGCCAATTCAATTTTCTGTGAAAAATTCCACCTGCATCAAACTGGTTGGAGAGAGTGCGATTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAGTACCTTGATTTTGGAGGTATACGTTGCTCATCCTGTCTAAAGGCTACTCAACTTCCTCTGATACAGGAAACTGGAAACTCTATCAGGCCTATTAGATCAGTAAAAAATCATGCTGAACATATTGATGATAGACTATTCCTCGATGGTTGTAGCAAAAGAAAACTTATGCACATGCGAAGCATTGTTGATGGTAGAGAATCCAGCCGGTGGCCTCAAGCTAAGAGAGATGACATAGATTCATGTATTGATCTAAACAGGGAAGACATGAGATTTTCAAATGTGATGAAACCGAGTAATCATTCATTAAAATTTACTACATTAGAAAATAATAGACCATCATGGGAGAGTAGAAGTATGCACAGATCAAGTTCATTGAATATTTCTCTGGGAGATTCATCAGGAAACTCTGTGCTACCTTCTGCTTTAGAGATTGCAGAAGGGAGATTTGAGGGTAAAACATCATCATCTTCCTTTCATCAAGGGAAAAGATCTCTCTCCATGATGCCTAAACCATTGATAAATGCAATAACCATAAATATGGAAACAAGCAATGGCATGGTCTCTCAAGAGCGTGTTGCACGGCCACCTACTGATGGAAAAGGCAGGAATATGTTACTTTCTCGTTACTGGCCTCGGATTACTGATCAAGAGCTTCAGCAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAATCTTGCGCTGAGGCCTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGTGTAACCCCTTGCATACAGGCCTTGCAATTAAATGCTGGCGACATTGTGATATTTAGTCGGATAGATCCTGGAGGCAAATTTGTTTTGGGGTTTAGAAGGGCATCAGATTCTATAGATTCACAGGTTGATGGCTCTGCTGCACATTCCAATGTTTTTTCAACAAAGAAAACAACCTTTTCTGGTGCAACTGCAAATATGCACCCAGGAAATAGTTATCATGATCTACTCCAGACAAGGAAAGGGAATGGTGATCCTTACTTAAATAGATGTTCAGAGCATTTCCGTTTGGGTACTGGAATTGCTGATTGTCTTCGAACTGAAAATTTTGAGATGGTAAACAACGATTTGGTGCAACTTCCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGGCCTGTGTGTAAGAGGTTGCTCGTACATAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGGCTTGCTTTGTCCGGCGCCCAGTGTCAAGTCCAGTATTGTAACAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCAGTCTTTGGAAAGAGAACTACAATAAATGCTCGTTCATCAGGGTCTTTGAGCTTTGCATCAGAGGAAACGAGTCCACAGGAATTAGATAATATTCTGGTAACCAATAAAGATTCAAAAAAGCGAAGAATTATGGAAAAAGCCAAGTCAATTATAGAACATGAGGCTTTCTGCTTGAATGAAGAAGCGAGTGCAGGAGTTTTGGATGATGATCTTGCTGAGCCTGGTGATTCATCAGGTGGAGCCACCACGAAACATGCAAGGCACCGTTCTGGTTGCATTTGCATTGTGTGCATTAAACCTCCAAGTGGAAAAGGGAGACATAGAGCAACATGCACTTGCCCTGCATGCATCACTGTGAAACGCCGTTTGGACACACTTATGACGCGTCAGCAGCAATGGCAATCAGAAGGTGAAGCAGATGGTAGCCAGAATGATGATATTTACGAGGAGGGTGAACTCAGTGCAGGACAAATAGACCTGAATTGTCGTCCCAATCATGATGAAGACATGCAAGTGGATATATGA 2208 0.4207 MEVEVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECDFCNKSIHCGCIISRFSFEYLDFGGIRCSSCLKATQLPLIQETGNSIRPIRSVKNHAEHIDDRLFLDGCSKRKLMHMRSIVDGRESSRWPQAKRDDIDSCIDLNREDMRFSNVMKPSNHSLKFTTLENNRPSWESRSMHRSSSLNISLGDSSGNSVLPSALEIAEGRFEGKTSSSSFHQGKRSLSMMPKPLINAITINMETSNGMVSQERVARPPTDGKGRNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDIVIFSRIDPGGKFVLGFRRASDSIDSQVDGSAAHSNVFSTKKTTFSGATANMHPGNSYHDLLQTRKGNGDPYLNRCSEHFRLGTGIADCLRTENFEMVNNDLVQLPISVSEKTQNIGPVCKRLLVHNEDAMELRVTWEEAQGLLCPAPSVKSSIVTIEDQEFEEYEEPPVFGKRTTINARSSGSLSFASEETSPQELDNILVTNKDSKKRRIMEKAKSIIEHEAFCLNEEASAGVLDDDLAEPGDSSGGATTKHARHRSGCICIVCIKPPSGKGRHRATCTCPACITVKRRLDTLMTRQQQWQSEGEADGSQNDDIYEEGELSAGQIDLNCRPNHDEDMQVDI* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2561 735 CDD B3_DNA 310 411 IPR003340 GO:0003677
Pvu8g2561 735 SUPERFAMILY DNA-binding pseudobarrel domain 309 411 IPR015300 -
Pvu8g2561 735 Gene3D - 290 417 IPR015300 -
Pvu8g2561 735 ProSiteProfiles B3 DNA-binding domain profile. 312 413 IPR003340 GO:0003677
Pvu8g2561 735 SMART B3_2 312 413 IPR003340 GO:0003677
Pvu8g2561 735 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 576 - -
Pvu8g2561 735 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 579 732 - -
Pvu8g2561 735 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 579 732 - -
Pvu8g2561 735 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 576 - -
Pvu8g2561 735 Pfam B3 DNA binding domain 312 412 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2561 Pvu-Chr8 56229384 56235717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2561 3 725 B3 DNA Binding Superfamily AT4G32010 41.485 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g2561 B3 4.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2561 - - vra:106763363 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2561 8 56229384 56235717 Pvu8g2561 8 56229384 56235717 ECH
Pvu6g0831 6 19807947 19815316 Pvu8g2561 8 56229384 56235717 PCT