Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2545 ATGTCCGTACACTCCACAGTGAACCTCCACCCCATGAACCTCGCCACCCCAAATTCTCATTTTGATGATAACCCACCATGCAAAACCAAGACCAAAACCCAAAAGAGGCTCCTTCGGATCATAATCACCGACCACGATGCCACTGATTCTGACTCCGACGACGAACAGCAACAAAACAACCCAAAAGCAAGAAAAGTCAAGAGGGAAATTACCCAAATCAGTATGCACCTTCCTCTCCCTGACAACTCCTTTTCTTCTTGTTCCTATTCTTCTGCTTCAGCTTCTGTTTCCACTTGTTCCTCCGAACAAGCCTCAAAGTGCAGAAAACCCAAAAAACCTCCACCATCCTCCGAGGCGGCCAACGGCCGTAGTAAGTTCCGCGGCGTCCGCCAGCGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGCGACCCCAACCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACCGAGTACGACAAAGCCGCCGTCAAACTCAAGGGGCCCAACGCCGTCACCAACTTCCCCCTCACAACGCCGCCTCCGGCGGCGGCGTCTCCCTTCGCCGCAATCGACAGCTTCAGCACCGACGGTGGCGCGTCGTATTCCGACTTGGTGGCCTCGCCCACGTCCGTTCTAACCTACGACTGCGACTCGACGCCGTTCGACAGTTTCCCTTACGGCAACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTCTAGCGGACGTTGACGTCGCGCTGACGTGTCATCACGGGAAGGAGGAGGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA 843 0.573 MSVHSTVNLHPMNLATPNSHFDDNPPCKTKTKTQKRLLRIIITDHDATDSDSDDEQQQNNPKARKVKREITQISMHLPLPDNSFSSCSYSSASASVSTCSSEQASKCRKPKKPPPSSEAANGRSKFRGVRQRPWGRWAAEIRDPNRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPAAASPFAAIDSFSTDGGASYSDLVASPTSVLTYDCDSTPFDSFPYGNVDALGFHIDAPLSLADVDVALTCHHGKEEEAFDEFDLDEFMKWPY* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2545 280 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Pvu8g2545 280 PIRSF PTI6 7 280 IPR017392 GO:0003700
Pvu8g2545 280 MobiDBLite consensus disorder prediction 100 131 - -
Pvu8g2545 280 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 MobiDBLite consensus disorder prediction 1 24 - -
Pvu8g2545 280 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Pvu8g2545 280 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 276 - -
Pvu8g2545 280 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pvu8g2545 280 MobiDBLite consensus disorder prediction 1 66 - -
Pvu8g2545 280 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 27 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2545 Pvu-Chr8 56074147 56075959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2545 28 231 AP2-EREBP Transcription Factor Family AT4G27950 43.062 3.05e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g2545 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2545 K13434 - gmx:100800489 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2545 8 56074147 56075959 Pvu8g2545 8 56074147 56075959 ECH
Pvu6g0838 6 19885920 19886712 Pvu8g2545 8 56074147 56075959 PCT