Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2530 GGCACCGTTCCTTCCACCATTTGGCAGATCAGGACTTTAAATGCAACCGAGGGAACTTATCTTCATTATCAACTTACAAGCATATCAGGCAGTACAAATCTTCCTCCAAATGGAAATCCTGTATGTTCGAATAATAACTCCTCAGTTCAGTTCTGTGGACGTGAAAGTGACAATGACAAGGATGGAGTCTCCACTGTTGTCTGTCCAAGTGCAATTGCCTGTGCACTTACATTATCTGCAGTTGTTTCCTTTCTTATTTTGAGAATACGCTTGAGAGATTATCGTGCACTTTCCAAGCGGCGTAACGCATCTAGGATCTCGCTAAAAGTGGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCTACAAACAGTTTTAGTGAGTCTGCTCAAATTGGAGAAGGGGGTTATGGGAAGGTTTATAAAGGTCGTCTTTCTGATGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCCATACAGAAATAGAATTGCTATCAAGGCTACACCATCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAGAGGGAGAACAGATGTTAGTCTATGAATATATGCCAAATGGAACCCTAAGGGATCACCTTTCTGCTTATTCAAAAGATGTTCTTAGGTTTTCTCTGAGGTTAAAGATGGCTCTAGAATCAGCAAAAGGTCTTGTATATCTACACACAGAAGCTAATCGTCCAATATTCCACCGAAACGTGAAGGCCAGCAATATATTATTGGACTCTAGGTACACAGAAAAAGTTGCCGATTTTGGACTTTCACGACTTGCCCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACTGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACACGTAATTTGACTCACAAAAGTGATGTTTACAGTCTGGGTGTTGTATTTTTGGAACTTTTGACTGGAAGGCCACCAATCTTTCATGGTGAAAATATAATTAGACAGGTTAATATGGTATACCAATCTGGTGGAATTTCTCTGGTTGTTGATAAACGTATTGAGTCGTATCCATTTGAGTATGCAGTGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTTACCAGATGAGAGGCCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATTTGTTCTATGTTACTTGAGCCAGATTCCAAGGGAGTTGAATATGTTACAAGTGATTCTTCTGGTACAATATTGAATTCACAACCTTCATCTTCTACTATAAACACTCCTTTTATTTCATAA 1320 0.4038 GTVPSTIWQIRTLNATEGTYLHYQLTSISGSTNLPPNGNPVCSNNNSSVQFCGRESDNDKDGVSTVVCPSAIACALTLSAVVSFLILRIRLRDYRALSKRRNASRISLKVEGVRSFDYKEMALATNSFSESAQIGEGGYGKVYKGRLSDGTVVAIKRAQEGSLQGEREFHTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAYSKDVLRFSLRLKMALESAKGLVYLHTEANRPIFHRNVKASNILLDSRYTEKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTHKSDVYSLGVVFLELLTGRPPIFHGENIIRQVNMVYQSGGISLVVDKRIESYPFEYAVRFLTLALKCCKDLPDERPKMAEVARELEYICSMLLEPDSKGVEYVTSDSSGTILNSQPSSSTINTPFIS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2530 439 ProSiteProfiles Protein kinase domain profile. 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2530 439 CDD STKc_IRAK 134 398 - -
Pvu8g2530 439 Gene3D Phosphorylase Kinase; domain 1 98 203 - -
Pvu8g2530 439 Gene3D Transferase(Phosphotransferase) domain 1 204 412 - -
Pvu8g2530 439 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 65 426 - -
Pvu8g2530 439 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Pvu8g2530 439 SUPERFAMILY Protein kinase-like (PK-like) 113 411 IPR011009 -
Pvu8g2530 439 Pfam Protein kinase domain 129 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2530 439 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 65 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2530 Pvu-Chr8 55873152 55877126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2530 105 398 Receptor kinase-like Gene Family AT5G01950 64.966 3.08e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pvu8g2530 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2530 - - pvu:PHAVU_008G244600g 871.692