Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2527 ATGGCAAAGAGTCGCACAAGCAACACTTATGAAGAGGCTAGAAAACAAAGACTTGAAGAGAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGAATGAGATCACAAGTTCTGCAAAGAAGAGACAGCATCATGTTCCTAAACCGAAACCTAAGAATACAAATGGTGAAGTGGAACCCAGGCGATCTTCACGTGTGCGAAACCCAGTTGCTTCGTACCAGGAAGATGTGAGCATACACCTTCCAGCTTTGCGGAAGAGGTCAAGATCAAATTCTTCGACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTCTGTGCTCTGGAGGCCGCGGAGGCACTCCAAATCAATATGAACTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGCCTTCCTTCTAAATTTTGTGAGGAACAACTTCCAAAAACTGTATTTGACATGGTTTTAGAAGATGAAAATGGCTCAGAATACGTGGCTGTTTACATTGGCAAGAGAAGTGGACTTAGCGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGGTTGAAGCTTCCAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAAGGACATTTTAGTTGAAGAAGGAAATATGCATACAACCAAAGTACCGAAAGCTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCTAAGGCAGGCAGCTGCATATGAAACTAATGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTCAAACCACAGGGTCTAAATTCAACTAAGCAAACTAAAATCTATAAGAAAAAAACACCGAAGAAATCTATACTTTCGGCTACTGCAGATTCAAAAGGAAAAGTGCAAATGAAAACTCAGAATCCAAAGGTGTCTCTGGAGCTTTCAAACAAGACAAGGAAGTCAAAGGCTATCAATGCAATTGATGACTCAGTCGAGTTAGAGAAAAAAAGTTTTGCTCGTGATGCTGATAGGAAGTTAGAAAAGGTTGAACTAGTAGAAGAAGCAAGCAAATGTGTGATACAGAAAACTAGAAAAAAAACAGCTCCCAAGTTTTTCAGAAAGAAAGCATAA 1206 0.3914 MAKSRTSNTYEEARKQRLEENKKRFEDLGISRISKNLNEITSSAKKRQHHVPKPKPKNTNGEVEPRRSSRVRNPVASYQEDVSIHLPALRKRSRSNSSTWGSYIARPLDEIKEATEEERLCALEAAEALQINMNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEQLPKTVFDMVLEDENGSEYVAVYIGKRSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYIVRAFPNLVEEKGKDILVEEGNMHTTKVPKAKCNLESESKTKKLRQAAAYETNESESSQEHIDKEVKPQGLNSTKQTKIYKKKTPKKSILSATADSKGKVQMKTQNPKVSLELSNKTRKSKAINAIDDSVELEKKSFARDADRKLEKVELVEEASKCVIQKTRKKTAPKFFRKKA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2527 401 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 3 235 - -
Pvu8g2527 401 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 235 IPR044837 -
Pvu8g2527 401 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Pvu8g2527 401 MobiDBLite consensus disorder prediction 8 30 - -
Pvu8g2527 401 Gene3D - 114 231 IPR015300 -
Pvu8g2527 401 MobiDBLite consensus disorder prediction 1 74 - -
Pvu8g2527 401 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Pvu8g2527 401 SMART B3_2 140 231 IPR003340 GO:0003677
Pvu8g2527 401 MobiDBLite consensus disorder prediction 55 69 - -
Pvu8g2527 401 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Pvu8g2527 401 Coils Coil 8 28 - -
Pvu8g2527 401 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2527 Pvu-Chr8 55839875 55845091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2527 10 230 B3 DNA Binding Superfamily AT5G58280 51.210 5.67e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g2527 B3 3.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2527 - - pvu:PHAVU_008G244300g 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2527 8 55839875 55845091 Pvu8g2527 8 55839875 55845091 ECH