Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2508 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAACAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCGCAGCAACCACCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACGACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGAAGAGCCAATCGACCGCAAACTGTCATGCCATCTTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGATGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGGCAGCCACGAGTATCATTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTATTTCCTCTCAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACGAATGGGCTAATCTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCTGAGTTTTCAAGGGTCTGGTTTGTTGCCCTGGATGCAGCAGAGAATGGATCCGACTTTGCTTGGAAACGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGCAGTGGAGATTTAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTATCTTCTAACAATATCCTACAGCCACAAGCCCAAGTATTGGCAGATAACCTGTCTCAGCATCTCCTTCAGAAATCACACAATCGCGAAGACCAAACGCAGCAGCAGCACACTTATCAAGATACGGTTTTACTTCATAGTGATCAGCTCCATCAAAGGCAACTCTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACGGTTTCACCAGGACAAAATATGATGAGTTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAGTTACCCCAACAATCATGGGCCCCAAAGTTTACACCATTGCAGGTCAATAATACCTTTGGCAACTCAATGCCACATGTGCAGCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACATTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCATCAGCTGATACTGATGCATCAGCAATGCCATTAGGGGAGTCTGGATTCCAAGCTTCTCTATATCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCCCAAAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCAGTAGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2535 0.4568 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLIWLRGGPGDQGLNSLSFQGSGLLPWMQQRMDPTLLGNDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVSSNNILQPQAQVLADNLSQHLLQKSHNREDQTQQQHTYQDTVLLHSDQLHQRQLSGLPSPSYSKPDFLDSSMKFPATVSPGQNMMSSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNNTFGNSMPHVQQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLGESGFQASLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2508 844 Gene3D - 126 229 IPR015300 -
Pvu8g2508 844 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pvu8g2508 844 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu8g2508 844 MobiDBLite consensus disorder prediction 468 488 - -
Pvu8g2508 844 SMART B3_2 128 230 IPR003340 GO:0003677
Pvu8g2508 844 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu8g2508 844 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pvu8g2508 844 ProSiteProfiles PB1 domain profile. 718 802 IPR000270 GO:0005515
Pvu8g2508 844 PANTHER AUXIN RESPONSE FACTOR 1 829 - -
Pvu8g2508 844 MobiDBLite consensus disorder prediction 811 830 - -
Pvu8g2508 844 Gene3D - 292 364 - -
Pvu8g2508 844 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pvu8g2508 844 Pfam AUX/IAA family 715 802 IPR033389 -
Pvu8g2508 844 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Pvu8g2508 844 SUPERFAMILY CAD & PB1 domains 716 792 - -
Pvu8g2508 844 Gene3D - 714 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2508 Pvu-Chr8 55661856 55672857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2508 98 815 B3 DNA Binding Superfamily AT5G37020 68.176 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu8g2508 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2508 - - gmx:100780393 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2508 8 55661856 55672857 Pvu8g2508 8 55661856 55672857 ECH
Pvu6g0880 6 20268682 20276245 Pvu8g2508 8 55661856 55672857 PCT