Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2468 ATGGTGAACACCACCACCACCACCGCCACCTACTTTCTAAATCCTCTACCCTTCGTCATTTTCCTAACCATCATCGTCCTTTTTGCAAACGCCCAAGACGACGTTTCAGTAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGGTGGACGGGCCCGGACCCATGCATGTGGGACCACGTCAGGTGCTCCGAAGATAAACGGGTCACCCGGATCCAAATCGGGCGCCTCAATCTCCAAGGTACTCTCCCTGCAACCCTTCACAACTTGACCCAGTTGCAACAGTTGGAGCTCCAATACAACAACATCTCGGGGCCCATTCCCTCGCTTAACGGCTTGACCAACCTCCGTGTCTTCATTGCCAGCAACAACCGCTTCTCCGCCGTCCCCGCCGACTTTTTCGCCGGCATGCCACAGCTCCAGGCGGTGGAGATCGACAACAACCCGTTTGAGCCCTGGGAGATTCCTCAGACTCTCCGAAACGCTTCTGTGCTTCAGAACTTCTCTGCCAACTCTGCCAACGTCAGAGGCACTTTGCCGGATTTCTTCAACTCCGAGGTGTTTCCTAGTTTGACCCTTTTGCACTTGGCCATCAATAACCTCGAGGGGACGTTGCCTTTGAGCTTTTCTGGCTCTCAGATTCAGTCTTTGTGGTTGAATGGGCAGAAGAGCGTTAACAGGCTTGGTGGCAGTGTTGCTGTTTTGCAGAACATGACTTTATTGACGGAGGTTTGGTTGCATTCCAATGCTTTTACGGGTCCCTTGCCTGATTTGTCTGGGTTGAAGAGTTTGCAGGTTTTGAGTTTGAGGGATAACAGGTTTACTGGTCCAGTTCCGGCTTCGTTGGTGGGTCTCAAGACACTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTATGCCGGTGTTTGGCAATGGAGTTGAGGTGGATAATGATAAGGATTCCAATAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATCCCAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGCTTATGGGGTATCCTCAAAGGTTTGGTGACAGTTGGAAGGGGAATGATCCTTGTGCTGGTTGGATTGGAATTTCTTGTGGAGATGGGAATATAACTGTTGTTAATTTTCAGAAGATGCAACTGAGTGGTGAGATATCCCCGGACTTGTCAAAGATTAAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCGATTCCAGTAGAGCTTACTACTTTGCCTCGGCTTAGCCTATTGAATGTTGCAAACAATCAGCTTTATGGGAAGGTGCCGAGTTTTAAAAGTAATGTAGTTGTGACTACTAATGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCAGGGTTCAGTGTCTCCAACGGCTCCCAATTCAAAGGGAGAAAATGGGGGTTCCGGAAATGGTGGCAAAAAGTCTTCTTCCCACGTGGGAGTGATCGTGTTTTCGGTGATTGGGGCGGTGTTTGTGGTTTCTATGATTGGTTTCTTGGTTTTCTGCCTGTTTAGGATGAAGCAAAAGAAGTTGAGCAGGGTCCAGAGCCCAAATGCTCTAGTTATTCATCCTAGGCATTCGGGGTCGGATAATGAGAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCGTACCTGGCAGTGAGGCAGGAGATATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAGGTTCTGAGGAATGTCACGGATAACTTCAGTGCGAAGAACATATTGGGACAAGGAGGTTTTGGAACGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAACAGGGAAGGGTGCGGCAGAATTCAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTTGTGGCTCTTCTAGGTTACTGCTTGGATGGGAATGAGAAGCTGCTTGTGTACGAGTACATGCCTCAAGGAACATTGAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGACTGGAACCACTGGAGTGGAATAGAAGATTGACAATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCACCAAAGCTTCATACACAGGGACTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGGCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACATTTGGATATTTGGCACCTGAGTATGCAGTCACTGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGGGTAATATTGATGGAGGTGATAACAGGAAGAAAAGCACTTGATGAGACTCAGCCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTCATTCCGCAAGGCCATTGACTCCGCAATTGATCTCAACGAGGAAACTCTTGCCAGTATTCACACTGTAGCAGAGTTAGCTGGCCACTGCTGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTTAACGTGCTTTCTTCTCTTGTTGAACTTTGGAAACCATCTGATCAGAATTCAGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTGAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCTCTTCTACCAAGCTTGGATAACACACAGACAAGTATACCTACTCGCCCATATGGATTTGCGGATTCTTTCACATCAGCAGATGGTAGGTGA 2844 0.4754 MVNTTTTTATYFLNPLPFVIFLTIIVLFANAQDDVSVMLALKNSLNPPGWTGPDPCMWDHVRCSEDKRVTRIQIGRLNLQGTLPATLHNLTQLQQLELQYNNISGPIPSLNGLTNLRVFIASNNRFSAVPADFFAGMPQLQAVEIDNNPFEPWEIPQTLRNASVLQNFSANSANVRGTLPDFFNSEVFPSLTLLHLAINNLEGTLPLSFSGSQIQSLWLNGQKSVNRLGGSVAVLQNMTLLTEVWLHSNAFTGPLPDLSGLKSLQVLSLRDNRFTGPVPASLVGLKTLEVVNLTNNLFQGPMPVFGNGVEVDNDKDSNSFCLSGPGDCDPRVQVLLSVVGLMGYPQRFGDSWKGNDPCAGWIGISCGDGNITVVNFQKMQLSGEISPDLSKIKSLQRIVLADNNLTGSIPVELTTLPRLSLLNVANNQLYGKVPSFKSNVVVTTNGNVDIGKDKSSQSPQGSVSPTAPNSKGENGGSGNGGKKSSSHVGVIVFSVIGAVFVVSMIGFLVFCLFRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTVPGSEAGDIQMVEAGNMVISIQVLRNVTDNFSAKNILGQGGFGTVYRGELHDGTRIAVKRMECGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEVITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDSAIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALEKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2468 947 ProSiteProfiles Protein kinase domain profile. 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2468 947 SMART serkin_6 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2468 947 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Pvu8g2468 947 PANTHER RECEPTOR PROTEIN KINASE TMK1 21 947 - -
Pvu8g2468 947 MobiDBLite consensus disorder prediction 447 483 - -
Pvu8g2468 947 CDD STKc_IRAK 599 872 - -
Pvu8g2468 947 MobiDBLite consensus disorder prediction 910 936 - -
Pvu8g2468 947 PANTHER OSJNBA0070M12.3 PROTEIN 21 947 - -
Pvu8g2468 947 Gene3D Transferase(Phosphotransferase) domain 1 671 891 - -
Pvu8g2468 947 Gene3D Phosphorylase Kinase; domain 1 554 670 - -
Pvu8g2468 947 Pfam Leucine rich repeat N-terminal domain 32 64 IPR013210 -
Pvu8g2468 947 Pfam Leucine rich repeat N-terminal domain 333 366 IPR013210 -
Pvu8g2468 947 SUPERFAMILY L domain-like 63 437 - -
Pvu8g2468 947 Gene3D Ribonuclease Inhibitor 31 328 IPR032675 -
Pvu8g2468 947 ProSiteProfiles Leucine-rich repeat profile. 92 114 IPR001611 GO:0005515
Pvu8g2468 947 SUPERFAMILY Protein kinase-like (PK-like) 571 877 IPR011009 -
Pvu8g2468 947 MobiDBLite consensus disorder prediction 910 947 - -
Pvu8g2468 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Pvu8g2468 947 Gene3D Ribonuclease Inhibitor 330 454 IPR032675 -
Pvu8g2468 947 Pfam Protein tyrosine and serine/threonine kinase 595 864 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2468 Pvu-Chr8 55289302 55293510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2468 78 875 Receptor kinase-like Gene Family AT5G07280 30.964 5.96e-83 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pvu8g2468 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2468 - K00924 gmx:100305404 1609.73