Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2466 ATGTCTTTCGCTCTCATCGAAGCCTGCAAGAAGCGAAAACGGTGGCCAAAATTTTTCAGGTTTAACTCGTTCGGTGACCCTGGTATTCCAATTGTACCTTTGGGTACTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCCGAAGATTATAGCGTCTCCGGGAACCCCCTTTGGTGTACCCTTCTCATCCATGATAAGTCCAACGTAATGGCTCCGCTTTACACCGTCGAAGAGCACGTCTGCCACTCTTCTCATCCCTTCTGCGATCATTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGAATCTATAGAAAATCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGTTATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATTATGGATCTATGGGATAGAGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGTTTCGTGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGCAGGTGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACGGAACCAGACTACAATGAAGCAATGACAACGCTTGGCTCTTTGGAGCTAGACATGATTGCAAAAGATTTGAATAAGACAAAGTTCAACAAAGAAATCAAACAGATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATATCACTCAGGGATCTTCTAAGGTTTATGCTCACTGTAAAGTCTTCTCGTGCTCCTGCACCTAAGATAACAGTCACCTTTTCTGCCGCTGCTGTTGCTGCTGATTCTACCTGTTCAGCATTAATCTCAAGAAATTCAACCAAACACACACTTCCAACCAGATCAAATTCTATAAAGGAGAAATCTGTAAGGTATAAGAAGTTCAGCAATGCAGTGACTAGCATGGATAGTAGGTGGCCGACAAGGAGGCTAGAGTTTGCCGCTCAAGTGATTGTGGACGCACTGAAAGAGAACAAGGCTGTGAAACCAGGCACAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCTGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTACTTAAATCACTCAACAATGTCATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCATCATCTCGAATTCTAGAGTACACTATTCACGATCTTGGCAAGGGGTACAAAGCCCCTGAACAGGAGTCTGAGGGGATGGCTTATGTAGATCAACAAGTAGTTGAGTCATCTTGGGTGCCTGGTAACGATGTTTACTGCGATGTACTGTTTTTGTACAAGAATGTGCTATTGGGCTATCCTGATTCAGAAACAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATACTTTGTAAAGGAGTGGGCAGAGAGGGATGAAGTAGAGGAGCAGTTATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTAGACAAAAAATATGAGTTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCACTGCATGCAACGGTTGGAGACTTGAAGAGGGCTTCTGAGGCTGCTCTTAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACTGACATTAAACAACTTATGGGAGTGAGTGATGAGGAAGTGCTGTTTGGACTAATCCAGTCTGGTGTAGAACTTTGTGTGAGGGGAATTGCCATTGATTTGTGCACCAATTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGTGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGAATAGATGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTAGTACCCTCCAGGACCGAATCATCCTTTTGTGCGGATTCTCCCGATTCTTTTCTCATTTCAGCAGACCCTTCTCTTTTGCTAGAATATGAGTATGGATGCTAA 2109 0.4486 MSFALIEACKKRKRWPKFFRFNSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVCHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEESIENQRHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEPDYNEAMTTLGSLELDMIAKDLNKTKFNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAPKITVTFSAAAVAADSTCSALISRNSTKHTLPTRSNSIKEKSVRYKKFSNAVTSMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSSRILEYTIHDLGKGYKAPEQESEGMAYVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYPDSETVDLAIQTILDSRYFVKEWAERDEVEEQLLTFICRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRASEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFCADSPDSFLISADPSLLLEYEYGC* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2466 702 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Pvu8g2466 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Pvu8g2466 702 SUPERFAMILY FYVE/PHD zinc finger 610 671 IPR011011 -
Pvu8g2466 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Pvu8g2466 702 CDD PHD_MMD1_like 621 665 - -
Pvu8g2466 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Pvu8g2466 702 SMART PHD_3 620 666 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2466 Pvu-Chr8 55267586 55270428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2466 10 671 PHD Transcription Factor Family AT5G22260 33.569 1.55e-120 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2466 - - gmx:100797388 1243.02