Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2465 ATGCTATTCTGCAAGAAAAGAAAGAACCTCATGAATGCTTCTTCCTCCAGAAAATTTGACAAGGATGAAGTAGTGGGAGAACGCATAATCAATAAACCAAGGTGGCTTGAGTCTTTTCTGAGGAAAACTTTCTTTGGCAACTGCACAACTCATCCATTCCGTAGGAATGAGTTAAATAAGTATTGTATAAACTGCAATTTGTCAGTTTGCCAATATTGTGTAGCTTCAGGTCCTCATCGTCATCACAAAATACTCAAAATCTATAGACATGTTTACAAGGATGTTGTCTCTCTTGCAACTATGGAAAAGTATATTGACAGCTCACAAATTCAGCCTTACAAATGCAACAAGCGACTGGTTATTTCACTGAATCCTCTACCTCATTCTGGTTCAACAGCAAATAATGAGGCATCATGCAATACTTGCAAAAGGAAATTGACTGAACCTGATTTATTTCGTTATTGCTCCATTTCTTGCAAGGTTAGAGCTGTTTTAAGTAACCCAGATGAATCAAGTCCTCCTTTCATTTCCATCCAGACTCCTCGTCTTCCCCCTTCACAGGAAAAGCCAGAGGAAACTTTTGAACCTCAAAATCCACAAAAGAGGAGAAGAAAGGGAATACCCCATAGAGCTCCCTTCTTCTGA 645 0.3907 MLFCKKRKNLMNASSSRKFDKDEVVGERIINKPRWLESFLRKTFFGNCTTHPFRRNELNKYCINCNLSVCQYCVASGPHRHHKILKIYRHVYKDVVSLATMEKYIDSSQIQPYKCNKRLVISLNPLPHSGSTANNEASCNTCKRKLTEPDLFRYCSISCKVRAVLSNPDESSPPFISIQTPRLPPSQEKPEETFEPQNPQKRRRKGIPHRAPFF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2465 214 Pfam B-box zinc finger 47 87 IPR000315 GO:0008270
Pvu8g2465 214 ProSiteProfiles Zinc finger B-box type profile. 48 87 IPR000315 GO:0008270
Pvu8g2465 214 Pfam PLATZ transcription factor 89 161 IPR006734 -
Pvu8g2465 214 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 11 214 - -
Pvu8g2465 214 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 11 214 - -
Pvu8g2465 214 Gene3D Classic Zinc Finger 43 115 - -
Pvu8g2465 214 SUPERFAMILY B-box zinc-binding domain 47 89 - -
Pvu8g2465 214 MobiDBLite consensus disorder prediction 171 214 - -
Pvu8g2465 214 CDD Bbox2 48 87 - -
Pvu8g2465 214 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2465 Pvu-Chr8 55259642 55265996 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pvu8g2465 PLATZ 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2465 - - zju:107416213 263.848