Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2427 ATGAGTTTCTGTTCTGATCATACCAAGGGTGTTTCCAATGCACATGTTTCCTCTGCAGTTGGAAATGACTCTTTTGAGCACAAAAGGCTCAAACTCATGACCCTTTTGAGAAAAATCATGTGGGACTTTGCCTTGGCATGTGTTGGTGTTGGTCCTTGTGGTGACAACAACGACCATAACGGTCAAAGGAAGACCACTTTGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGGCAAGTGCTGACCCTCAATCGGTTCACTCGTCTTTCAGGTTCAGCTTCTGCTCTCAGGTAGAGGTTGAGTCCTTCAACATGAGCTCTTCTGCTTCTGCTGCTGCCGCTGCAACCTTTTTGATGGTAAATTTGGAATATGAATCTCAAATTAAGGAGATGAAATGGAGAACACATTCACTGGGGAAAAGCATATCTCCAGTCTTCAACCCCTTGACCAGGTTCAGCTATAGTGAAATTCTGTCAGCTACTCAAAATTTTTCCAAAGAGAGAGTGTTAGGGAGAGGTGCCTTGAGCTGTGTTTTTAAAGGAAGAGTTGGGCTATGGAGGACTGCTGTTGCTATTAAAAGGTTGGACAAGGAAGACAAGGAGTGTGCTAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAATGTTGTTCCTCTAGTGGGGTTCTGTATTGACTCAGAGGAGGGTTTGTTTTTGGTATACAAGTATGTGTCAGGGGGCAGCTTAGAGCATCACTTACATGGGAAGAAGAAAAGTGTGAAGGGTAGTTCACCACTTCCATGGTCTGTGAGATATCAAGTTGCAATTGGGATTGCAGAAGCCGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTTCTCTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTACATGGACTTCTGCCCCGTCAGTTCCTTTTCTTTGCAAAACTGTGAAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTGGGAGTTGTTTTATTGGAACTCTTAACTGGCCGCAAGCCAATTGAAGAAAAAAGACCCCCTGGAGAGGAAAACTTGGTAGTATGGGCTAAACCTTTGCTTAGAAAAGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAAGTCAAGTACAATTCGAGTTACATAGATCAAATGGCTCGGATGGTTGATGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTAGGAGGCCTAGCATAGGTGAGATTGTTGCAATACTGAAAGGTGAAGTTGAGCCTGTGTTCTCTAGAAGAAGGAAGTCTGGTTATCTTGGTAATGGATTTGTGATTGATTATTACCCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCCTTGGCAATGCTTGGAGTTTCAGAGTGTGAGGATGATGATTTTCTCTATGGTCGTTGA 1524 0.4265 MSFCSDHTKGVSNAHVSSAVGNDSFEHKRLKLMTLLRKIMWDFALACVGVGPCGDNNDHNGQRKTTLEHNKAWLLAESGAELASADPQSVHSSFRFSFCSQVEVESFNMSSSASAAAAATFLMVNLEYESQIKEMKWRTHSLGKSISPVFNPLTRFSYSEILSATQNFSKERVLGRGALSCVFKGRVGLWRTAVAIKRLDKEDKECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKSVKGSSPLPWSVRYQVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELLTGRKPIEEKRPPGEENLVVWAKPLLRKGKGAIEELLDPQVKYNSSYIDQMARMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVFSRRRKSGYLGNGFVIDYYPQLQQTNNEMKSHLALAMLGVSECEDDDFLYGR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2427 507 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 13 505 - -
Pvu8g2427 507 Gene3D Transferase(Phosphotransferase) domain 1 246 459 - -
Pvu8g2427 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Pvu8g2427 507 SUPERFAMILY Protein kinase-like (PK-like) 153 453 IPR011009 -
Pvu8g2427 507 ProSiteProfiles Protein kinase domain profile. 168 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2427 507 Pfam Protein kinase domain 168 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2427 507 SMART serkin_6 168 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2427 507 PANTHER OS01G0750732 PROTEIN 13 505 - -
Pvu8g2427 507 Gene3D Phosphorylase Kinase; domain 1 153 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2427 Pvu-Chr8 54874665 54877471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2427 154 451 Trihelix Transcription Factor Family AT1G70460 42.525 5.71e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pvu8g2427 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2427 - - gmx:100802176 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2390 1 49226595 49229694 Pvu8g2427 8 54874665 54877471 PCT