Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2424 ATGGCACTATCTTTGACATCTCATGGGGTCAACCAGTACCAAAAGTCTGGGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGCCTCAGCAATGATTCAGCTTCAGCCATAACTCAGTGTCCTCCTCTATGTGGCATTGGCAATGACTATGTTCAAAAGAGCACGCATTGCCATCTTGAAGAAGCAGAATCTCTAATCAATTTCAAAGCCAATGAGTTCAGCAACCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGTTGGCTGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGTGACCAATGGAACCATGTTAGTCCCAAAAGCACCACAGACATGCGCCTGGTCCAAAATTTCAGTTGCTCTGAAACTGCTACTTGCTATAGCTCCATGTTCAAAGGTGCAAAAGAGAAGCAGCAACATGGTGAAAGTTCATCTTCTGGGTGGCTATACTCAGAACCTAATGGCCACAGTGATAGCGTGAATGAGTCAGCAGCACAAGAATTAGTCTTGAGAAAGCGATCTTTTATGGGAGAGACCATGCAAGCTGCCAATGCCAAGAAGCCATGCACAACTGCAAGTAAAGCAACAAAACCAAAGTCAAGCCCATCCAAGGATCCTCAAAGTGTTGCTGCTAAGAACAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCTAACGGCTCCAAGGTTGATTTGGTCACCATGTTGGAGAAAGCAATTAGTTACGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAATGA 882 0.441 MALSLTSHGVNQYQKSGVEEEDGSQSTNGLSNDSASAITQCPPLCGIGNDYVQKSTHCHLEEAESLINFKANEFSNLMQGSESFLSFQQSWLFSKESNLHEGCDQWNHVSPKSTTDMRLVQNFSCSETATCYSSMFKGAKEKQQHGESSSSGWLYSEPNGHSDSVNESAAQELVLRKRSFMGETMQAANAKKPCTTASKATKPKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2424 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Pvu8g2424 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Pvu8g2424 293 Pfam Helix-loop-helix DNA-binding domain 217 257 IPR011598 GO:0046983
Pvu8g2424 293 Gene3D - 202 264 IPR036638 GO:0046983
Pvu8g2424 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 291 - -
Pvu8g2424 293 SMART finulus 213 262 IPR011598 GO:0046983
Pvu8g2424 293 MobiDBLite consensus disorder prediction 189 213 - -
Pvu8g2424 293 MobiDBLite consensus disorder prediction 1 33 - -
Pvu8g2424 293 MobiDBLite consensus disorder prediction 147 168 - -
Pvu8g2424 293 MobiDBLite consensus disorder prediction 186 219 - -
Pvu8g2424 293 CDD bHLH_AtIND_like 208 270 - -
Pvu8g2424 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2424 Pvu-Chr8 54849880 54851537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2424 60 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 48.571 4.94e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g2424 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2424 - - gmx:106795957 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2424 8 54849880 54851537 Pvu8g2424 8 54849880 54851537 ECH
Pvu1g2393 1 49254549 49256564 Pvu8g2424 8 54849880 54851537 PCT