Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2423 ATGGAGGAGGCTCCTCCGGCAGAGGCGGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCAGCTAAACGACCCCGTTTTGAGGGTCCAAGCGGCCAGGGACATCCGCCGCCTCACCAAAAACTCCCACCGCTGCCGCCGCCACCTCCGCCAGGCCGTCTCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGACTTCCACGAACCCGCGCTCCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTAGAGCCAATAATCAGTTTCCTCAAGTCACAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTACTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATTAGTGCTTGTGGCGCCATTCCTCTCCTTGTAAATACTCTCAGAGATGGAAGCCCCCAAGCTAAAGTTGATGCTGTGAAGGCTCTGTCCAATTTATCAACACACCCCGATAACCTCAGCATCATTCTCGAAACAAATGCAACGCCTTTTATAGTTAGTCTTCTAAAAACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGGTCTGATAGAATCCTTGGTGGGTTACGAGGAGGGCAGAACTGCCTTAACATCTGAAGAGGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGTACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGACAATGTGTCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTTACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTTAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTCAGAACATAGTGTGTGACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACCCCTAGTGATATTCCTATGACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4814 MEEAPPAEAVAVRRALELLQLNDPVLRVQAARDIRRLTKNSHRCRRHLRQAVSPLVSMLRVDSPDFHEPALLALLNLAVQDEKNKINIVEAGALEPIISFLKSQNPNLREYATASLLTLSASPTNKPIISACGAIPLLVNTLRDGSPQAKVDAVKALSNLSTHPDNLSIILETNATPFIVSLLKTCRKSSKIAEKCSGLIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDIPMTSCASEVSSK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2423 366 SMART arm_5 122 162 IPR000225 GO:0005515
Pvu8g2423 366 SMART arm_5 81 121 IPR000225 GO:0005515
Pvu8g2423 366 SMART arm_5 206 247 IPR000225 GO:0005515
Pvu8g2423 366 SMART arm_5 163 205 IPR000225 GO:0005515
Pvu8g2423 366 SMART arm_5 40 79 IPR000225 GO:0005515
Pvu8g2423 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Pvu8g2423 366 Gene3D - 2 348 IPR011989 -
Pvu8g2423 366 PANTHER U BOX DOMAIN-CONTAINING 6 349 - -
Pvu8g2423 366 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Pvu8g2423 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Pvu8g2423 366 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 349 - -
Pvu8g2423 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Pvu8g2423 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Pvu8g2423 366 SUPERFAMILY ARM repeat 15 300 IPR016024 -
Pvu8g2423 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2423 Pvu-Chr8 54837849 54841531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2423 12 289 U-box Gene Family AT2G23140 33.214 1.76e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2423 - - gmx:100793971 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2423 8 54837849 54841531 Pvu8g2423 8 54837849 54841531 ECH
Pvu1g2394 1 49265697 49269780 Pvu8g2423 8 54837849 54841531 PCT