Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2419 TCTAAGCAAGAAGACCAAAAGCTCATTGACTACATCAGAGTTCATGGTGAGGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGCAGGCTGAGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCTGGAAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGTAGAAAACTAATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCGTTTCTTTTCCTCATTCTTCTTCTGCAGAGGGTGCATCAAATACCGAGTCCATGAACAAAGACCACAGAATCCCTATCTTCCCAGTTGCTGCTACCCATCATAGGATTTCCTTCAGAGAAGAAGAATCAGCAATTATTTCGTCACCTACTTTGAATCTTGACCTAACAATTGCTTTACCTTCGTCTATGATTGGTGCTTTGGAAGAGAAGGCAATACAAAATTCCAAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG 612 0.4265 SKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSVSFPHSSSAEGASNTESMNKDHRIPIFPVAATHHRISFREEESAIISSPTLNLDLTIALPSSMIGALEEKAIQNSKSTKTLDMEIDLNC* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2419 203 Gene3D - 1 49 - -
Pvu8g2419 203 MobiDBLite consensus disorder prediction 107 132 - -
Pvu8g2419 203 CDD SANT 1 44 IPR001005 -
Pvu8g2419 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 196 - -
Pvu8g2419 203 CDD SANT 55 95 IPR001005 -
Pvu8g2419 203 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Pvu8g2419 203 PANTHER MYB TRANSCRIPTION FACTOR 1 196 - -
Pvu8g2419 203 MobiDBLite consensus disorder prediction 109 132 - -
Pvu8g2419 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 44 IPR017930 -
Pvu8g2419 203 SMART sant 1 46 IPR001005 -
Pvu8g2419 203 SMART sant 49 97 IPR001005 -
Pvu8g2419 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Pvu8g2419 203 Pfam Myb-like DNA-binding domain 1 44 IPR001005 -
Pvu8g2419 203 Pfam Myb-like DNA-binding domain 52 94 IPR001005 -
Pvu8g2419 203 ProSiteProfiles Myb-like domain profile. 1 44 IPR001005 -
Pvu8g2419 203 Gene3D - 52 128 - -
Pvu8g2419 203 SUPERFAMILY Homeodomain-like 1 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2419 Pvu-Chr8 54811323 54812393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2419 1 177 MYB Transcription Factor Family AT4G38620 53.368 1.50e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g2419 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2419 K09422 - gmx:100306391 313.923