Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2415 ATGGGGTGCTGCTTGAGTGCCAAGATCAAAGCAGAGAGCCCTCCACGCAACGGTTTGAGCTCAAAGGATGGTAACACAGAAGAGGATGGCTTAAGTGGCAAGATCTCCACTCCCTCCGTGCCTCCAACTCCACGGACAGAGGGTGAGATCTTGAAGTCTTCAAATATGAAGAGCTTCACCTTTGGTGAGCTAAAAATTGCTACAAGAAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGAGGGTTTGGTTGTGTTTTTAAGGGGTGGATTGATGAGCAGTCACTTGCACCAGTTAGACCAGGGACTGGATTGGTCATTGCTGTGAAGAGGCTAAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAAAGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGTTTGGATAACCATTTATTTAGGAGAGCTTCTTATTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCCTGCTTGATTCAAATTACAACGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCTGCTCCTGAATATATTGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATTATGTCTGGCAAACGTGCTCTTGACAGCAACAGGCCAGGTGGGGAGCACAATCTAATTGAATGGGCCAAACCATACCTCAGCAACAAACGTAGGATCTTCCAAGTCATGGATGCTCGCATTGAAGGCCAATACTCTATGCGCACTGCTATGAAAGTATCCAACCTTGCCATTCAATGTCTCTCTGTGGAACCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAACATTGGAGGAACTTCAGGATTCTGGTGATAAAGCTGTTGCAGGGGTGGGAAGCTATCATTATCAAACTGTGAGAAGGAGTGGTCATAGCTCAAGCAGCAGTGGCTACAGACTACATAGAGGTAAACAACATGAAACAACAAAGAAGTGA 1203 0.4464 MGCCLSAKIKAESPPRNGLSSKDGNTEEDGLSGKISTPSVPPTPRTEGEILKSSNMKSFTFGELKIATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGLVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPGGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSMRTAMKVSNLAIQCLSVEPRFRPKMDEVVRTLEELQDSGDKAVAGVGSYHYQTVRRSGHSSSSSGYRLHRGKQHETTKK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2415 400 Gene3D Transferase(Phosphotransferase) domain 1 157 370 - -
Pvu8g2415 400 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Pvu8g2415 400 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2415 400 CDD STKc_IRAK 77 356 - -
Pvu8g2415 400 MobiDBLite consensus disorder prediction 18 49 - -
Pvu8g2415 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Pvu8g2415 400 MobiDBLite consensus disorder prediction 374 400 - -
Pvu8g2415 400 SUPERFAMILY Protein kinase-like (PK-like) 44 353 IPR011009 -
Pvu8g2415 400 PANTHER KINASE 1B 24 397 - -
Pvu8g2415 400 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Pvu8g2415 400 MobiDBLite consensus disorder prediction 374 388 - -
Pvu8g2415 400 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Pvu8g2415 400 PANTHER OS01G0588500 PROTEIN-RELATED 24 397 - -
Pvu8g2415 400 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2415 Pvu-Chr8 54769203 54773797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2415 15 365 Glycoside Hydrolase AT3G07070 46.111 8.06e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu8g2415 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2415 - - gmx:100775335 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2401 1 49318730 49322719 Pvu8g2415 8 54769203 54773797 PCT