Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2408 ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGAGGAGGGGGTTCCAATAGGAGGGGATTCGGTGGAGGCAGGCGCAGGGACACCAGCAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTGCGGTTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGGACCAGAGCCAGAGGACCAGCAGGCTATGGAGGACGTAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAGTTAGTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGATATCGTTCAAGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCCTAGATCACCAAGAGGTCCTCCCCGGGAGCGAGATGGTGAGCAAAAGCGTAGATCTTATTCTCCTGGATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCGTTGGATCTAGATCAAGATCTGCTGACCTGTCACCAAGGCGTGGAAGATGA 804 0.5062 MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDTSNGSLLVRNIPLDCRPEELRFPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRARGPAGYGGRRSSHYGRSRSRSVSRSRSPPYHSGSRSRYRSRSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPRERDGEQKRRSYSPGYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPVGSRSRSADLSPRRGR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2408 267 MobiDBLite consensus disorder prediction 152 185 - -
Pvu8g2408 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Pvu8g2408 267 PANTHER OS02G0252100 PROTEIN 23 265 - -
Pvu8g2408 267 SMART rrm1_1 40 113 IPR000504 GO:0003723
Pvu8g2408 267 MobiDBLite consensus disorder prediction 118 267 - -
Pvu8g2408 267 MobiDBLite consensus disorder prediction 186 212 - -
Pvu8g2408 267 MobiDBLite consensus disorder prediction 218 233 - -
Pvu8g2408 267 Gene3D - 31 155 IPR012677 -
Pvu8g2408 267 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Pvu8g2408 267 MobiDBLite consensus disorder prediction 1 38 - -
Pvu8g2408 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Pvu8g2408 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2408 Pvu-Chr8 54720713 54724185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2408 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 35.789 7.13e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2408 K12900 - gmx:100804294 382.104