Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2392 ATGGGGTCTCACTATCAGTACTGGATGCATGTGAGGAGAGAACAAATCATGAATTCACAGCCACATAAAGCACCAATTATTGGAGATGTCAGGAAGAACAATTGGGAAGAAAGGGCTTTTGCTGAAGACGCAACTAGGAGGAGTCTTGGTTGGAGCATGTGGCCTCCAAGATCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCTCAAGCACTTGGGGGTCACATGAATATCCACAGAAGGGACAGGGCTAGGCTCAAACAAAACCTCAGAGCTCATCACAATTATGAACCCTTTTCTCATCATTACCATCACCAAAATGATGTCACCATCAAATCCTCATTAGCAACTACAATTTCAACAACCAGATCACTCTCATGTATATCCACACAACAAAACTGTGTTATCTTGGGACAAATGGGGTCTCCTAAATCAGAACAAGAAAGGGTGGTCAAAGCAAAGGAGTACAGTTTTAAAGCCTTGGGATGCAGTGATTTTGTTGAAACAAGTTTGTCTGTGGGTCTGACTTCTATGTTTGGCCAAAATTCATCACCAATCGTTCCTTGTTGGGACACACCCAAAATCAGTTGCAAGAGACTAAAAAATACCATTTCTTCTCTTCCTCTTTTCCTCAGACCATGTTCAAAGGACGAAGGCCTGGCTTTTCAACCTCTGGAAATCTCACTTGGACTTCATCATGGAATCGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAGCACAAAGTTAAGTAG 762 0.4265 MGSHYQYWMHVRREQIMNSQPHKAPIIGDVRKNNWEERAFAEDATRRSLGWSMWPPRSYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLRAHHNYEPFSHHYHHQNDVTIKSSLATTISTTRSLSCISTQQNCVILGQMGSPKSEQERVVKAKEYSFKALGCSDFVETSLSVGLTSMFGQNSSPIVPCWDTPKISCKRLKNTISSLPLFLRPCSKDEGLAFQPLEISLGLHHGIEDLDLELRLGKQHKVK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2392 253 Gene3D Classic Zinc Finger 55 117 - -
Pvu8g2392 253 PANTHER OS07G0101800 PROTEIN 5 252 - -
Pvu8g2392 253 Pfam C2H2-type zinc finger 59 83 - -
Pvu8g2392 253 SMART c2h2final6 59 81 IPR013087 -
Pvu8g2392 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Pvu8g2392 253 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 252 - -
Pvu8g2392 253 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Pvu8g2392 253 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2392 Pvu-Chr8 54586549 54587394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2392 36 247 C2H2 Transcription Factor Family AT5G06070 38.318 6.55e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g2392 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2392 - - vun:114195124 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1210 8 14650951 14652029 Pvu8g2392 8 54586549 54587394 ECH
Pvu8g2392 8 54586549 54587394 Pvu8g2392 8 54586549 54587394 ECH
Pvu1g2429 1 49569068 49570116 Pvu8g2392 8 54586549 54587394 PCT