Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2391 ATGGCAGGAATTTGTTGCGGCGTTGTTGGAGAGGCCGGAGAGACTGCTTCTCCGACCAAACCCACCTCGCGCCCTTTCTCTCGCCGAAGTTTGGACCAACTGCCTTTGAAATACATCGCCGGCGTGGCAATCCCGGCGCCGGAGAACCCTCGGAAGCGCCAGAAGTTAGATCAGCGTGCTTCTCCGCCGCGGGAGTGTCAAAACGCGGTTCAGAGTTCTGAATCGAAGCGAGTCGAGGCTGTCTCGCTTCCGAATAGTTCGAAGGTTCCTACGTTGGACTCGACAATTGTTGTGGTCGAGGAGGAGAGTCCGAGGTATGGGGTAACCTCGGTTTGTGGCCGGAGGAGGGACATGGAAGACGCTGTTTCAGTGCATCCTTCGTTCTGTCTTGAAAATCGCGATGAAGATCAGAAAGGCTTTCATTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACGTGGCGAGTATGTGCAAGGAGAGGTTACACGAGATAGTGAAGGAGGAGATTCAAAAAGCGAAAGAGAATTTGGAATGGGAATCGATGATGAAGAAGAGTTTTGCTCGAATGGACCAAGAGGTCCAAAGTTGGAGCAGAACCAACGAGACACGCACGTGCAGGTGCGAGCTTCAGACCCCGCGCTGCGACGCCGTTGGCTCCACCGCGGTCGTCGCCATAGTCACGCCGGAAAAGATAATCGTGGCCAACTGCGGCGACTCGCGCGCCGTGCTCTGCCGTAACCGCGCACCCGTCCCACTCTCGGACGATCACAAGCCGGATCGACCCGACGAGTTGCTTCGGATCGAAGATGCTGGTGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTCTTGGCCATGTCAAGAGCCATAGGGGACAACTATCTGAAGCCGTATGTAATTTCAGAACCGGAGGTAACGGTAACGGAGCGGAGTGAGGAGGATGAGTGTTTGATACTAGGGAGTGACGGGCTTTGGGACACGGTGCAAAACGACACCGCGTGTAAGGTGGCGCGGATGTGTCTGAACGGGCAGAAGGCGGCGTCTCCGGGGAGAGAGTTGGCGGTTGAGTGTTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACTAAGTTGGCGTTGGTGAGGCACAGTTCCGACAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATGATCGTGAACAATAA 1200 0.5583 MAGICCGVVGEAGETASPTKPTSRPFSRRSLDQLPLKYIAGVAIPAPENPRKRQKLDQRASPPRECQNAVQSSESKRVEAVSLPNSSKVPTLDSTIVVVEEESPRYGVTSVCGRRRDMEDAVSVHPSFCLENRDEDQKGFHFFAVFDGHGCSHVASMCKERLHEIVKEEIQKAKENLEWESMMKKSFARMDQEVQSWSRTNETRTCRCELQTPRCDAVGSTAVVAIVTPEKIIVANCGDSRAVLCRNRAPVPLSDDHKPDRPDELLRIEDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSEEDECLILGSDGLWDTVQNDTACKVARMCLNGQKAASPGRELAVECSDKACSDASILLTKLALVRHSSDNVSVVVVDLRRDDREQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2391 399 Gene3D - 93 399 IPR036457 -
Pvu8g2391 399 ProSiteProfiles PPM-type phosphatase domain profile. 105 392 IPR001932 -
Pvu8g2391 399 Pfam Protein phosphatase 2C 105 367 IPR001932 -
Pvu8g2391 399 CDD PP2Cc 105 367 IPR001932 -
Pvu8g2391 399 PANTHER ALPHABET, ISOFORM E-RELATED 31 397 - -
Pvu8g2391 399 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 31 397 - -
Pvu8g2391 399 SUPERFAMILY PP2C-like 93 393 IPR036457 -
Pvu8g2391 399 MobiDBLite consensus disorder prediction 64 82 - -
Pvu8g2391 399 MobiDBLite consensus disorder prediction 10 82 - -
Pvu8g2391 399 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Pvu8g2391 399 SMART PP2C_4 95 390 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2391 Pvu-Chr8 54565786 54567827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2391 104 394 PP2C-type Phosphatase Gene Family AT1G07430 64.151 1.46e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2391 K14497 - gmx:100781388 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2440 1 49644995 49647503 Pvu8g2391 8 54565786 54567827 ECH
Pvu8g2391 8 54565786 54567827 Pvu8g2391 8 54565786 54567827 ECH
Pvu1g2440 1 49644995 49647503 Pvu8g2391 8 54565786 54567827 PCT