Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2378 ATGAGCTCACAGGGGCAAGGGATTGATGAGGCGGTTCTGGATGACATAATCCGGCGCTTAACGGAGGTCCGATTGGCCCGACCCGGCAAGCAGGTTCAGCTCTCCGAGTCAGAGATCAAACAACTCTGCGTCGCTTCTCGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTGGAAGCCCCCATCAAGATTTGCGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGGGTTTGCCTCCTACTGCAAATTATCTCTTTTTGGGGGACTATGTGGACCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCATATAAAATCAAATATCCAGAAAACTTTTTCCTGTTGAGGGGGAATCATGAGTGTGCTTCCATTAATAGGATTTATGGGTTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCCTTTACAGACTGTTTTAACTGCCTTCCTGTGGCTGCCCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTTACAAACTTGGATGAAATCAGGATTCTACCCCGTCCTACTGCAATTCCCGACACTGGCTTGCTTTGTGATTTGCTTTGGTCTGATCCTGGTAGGGATGTGAAGGGTTGGGGAATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGATCTCATTTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTCGCTGACAGGCAACTTGTTACGATATTTTCAGCTCCAAACTATTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGATGATAACTTGATGTGCTCTTTTCAGATTCTCAAGCCTGCAGAGAAAAAATCAAAGCTTGTGATAAACAAGATGTGA 945 0.4434 MSSQGQGIDEAVLDDIIRRLTEVRLARPGKQVQLSESEIKQLCVASRDIFINQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPTANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDCFNCLPVAALIDDKILCMHGGLSPELTNLDEIRILPRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDDNLMCSFQILKPAEKKSKLVINKM* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2378 314 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Pvu8g2378 314 Gene3D - 6 313 IPR029052 -
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Pvu8g2378 314 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Pvu8g2378 314 SUPERFAMILY Metallo-dependent phosphatases 23 307 IPR029052 -
Pvu8g2378 314 CDD MPP_PP1_PPKL 12 302 - -
Pvu8g2378 314 SMART pp2a_7 34 304 IPR006186 GO:0016787
Pvu8g2378 314 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Pvu8g2378 314 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Pvu8g2378 314 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 6 308 - -
Pvu8g2378 314 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2378 Pvu-Chr8 54473811 54477742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2378 63 250 Calmodulin-binding Proteins AT5G63870 32.287 2.79e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2378 K06269 - gmx:100807069 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2378 8 54473811 54477742 Pvu8g2378 8 54473811 54477742 ECH