Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2377 ATGCCCCTTCTTCTCCATCTCTTTGTCATTTTCATTCCTCTTCCTCCCTTTTCCCTTCCCTCATCTTCTCTCTCACAACATTGCCTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATGTCTCCTCGCTCGGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATGGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTGAAGAGACCAAACGCCCATCAAGGATATAGTTGGGGACAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGCTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAAATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGCCATTCCTGTGGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCGTATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCAGCAGGCTTGATAGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGCAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTATTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTGGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTATGCCTTTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGCGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGCAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAAGTTCTTTCCTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCCTCCTCCTCCTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTACGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1620 0.4346 MPLLLHLFVIFIPLPPFSLPSSSLSQHCLFLLMAPSSDVNHLSHPCIYGDYMSPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESMVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGQDTGDDYSKAPLDTLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2377 539 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 52 539 - -
Pvu8g2377 539 MobiDBLite consensus disorder prediction 462 484 - -
Pvu8g2377 539 ProSiteProfiles LIM domain profile. 172 232 IPR001781 -
Pvu8g2377 539 MobiDBLite consensus disorder prediction 462 483 - -
Pvu8g2377 539 ProSitePatterns LIM zinc-binding domain signature. 174 208 IPR001781 -
Pvu8g2377 539 SMART lim_4 173 225 IPR001781 -
Pvu8g2377 539 Pfam Protein DA1 323 533 IPR022087 -
Pvu8g2377 539 Gene3D Cysteine Rich Protein 169 233 - -
Pvu8g2377 539 CDD LIM_DA1 174 226 - -
Pvu8g2377 539 PANTHER PROTEIN DA1-RELATED 2 52 539 IPR045218 -
Pvu8g2377 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 199 - -
Pvu8g2377 539 Pfam LIM domain 174 227 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2377 Pvu-Chr8 54461684 54466341 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu8g2377 DA1-like 2.1e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2377 - - vun:114193624 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2377 8 54461684 54466341 Pvu8g2377 8 54461684 54466341 ECH
Pvu1g2451 1 49738889 49744752 Pvu8g2377 8 54461684 54466341 PCT