Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2355 ATGTTGGTCACTACTGAGGACAAGTCTCATGTTGTTGTTGTTGTTGACATACACAGTAATGGCTGTTGTCACCGGAGCTCGGCCGCTGACGAGGGGTGTTCCGACGCCACCGATCACTCGCATGAGGGGCAAAGCTCTTCCCATGATCCTGGCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGCTTCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTTCAGTCCTCGAAGTTAAGGTGCATTTGGATAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGAACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATATGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGCAAATGATGCTTCCACGGTACCACCATCAGGAACAGCACCACCCACAGAAACTAGAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTCCTACTAGCCTGTATGGTCTTTGCATTTGTCATATCCTGGCTCTTCCACTTTAATGTACCCTCTTGA 654 0.4786 MLVTTEDKSHVVVVVDIHSNGCCHRSSAADEGCSDATDHSHEGQSSSHDPGTEIVGVCEKERGSSASECSVEVDLEEGSVLEVKVHLDNVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTVPPSGTAPPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2355 217 ProSiteProfiles Zinc finger RING-CH-type profile. 86 152 IPR011016 GO:0008270
Pvu8g2355 217 PANTHER ZINC FINGER, RING-CH-TYPE 15 217 - -
Pvu8g2355 217 CDD RING_CH-C4HC3_MARCH 94 146 - -
Pvu8g2355 217 Pfam RING-variant domain 94 145 IPR011016 GO:0008270
Pvu8g2355 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 154 IPR013083 -
Pvu8g2355 217 SUPERFAMILY RING/U-box 91 148 - -
Pvu8g2355 217 SMART ringv_2 93 146 IPR011016 GO:0008270
Pvu8g2355 217 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 217 - -
Pvu8g2355 217 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2355 Pvu-Chr8 54123895 54126428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2355 57 217 C3H Transcription Factor Family AT5G05830 67.284 5.81e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2355 - - gmx:100818979 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1160 8 13342605 13345724 Pvu8g2355 8 54123895 54126428 ECH
Pvu8g2355 8 54123895 54126428 Pvu8g2355 8 54123895 54126428 ECH