Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g2355 | ATGTTGGTCACTACTGAGGACAAGTCTCATGTTGTTGTTGTTGTTGACATACACAGTAATGGCTGTTGTCACCGGAGCTCGGCCGCTGACGAGGGGTGTTCCGACGCCACCGATCACTCGCATGAGGGGCAAAGCTCTTCCCATGATCCTGGCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGCTTCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTTCAGTCCTCGAAGTTAAGGTGCATTTGGATAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGAACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATATGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGCAAATGATGCTTCCACGGTACCACCATCAGGAACAGCACCACCCACAGAAACTAGAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTCCTACTAGCCTGTATGGTCTTTGCATTTGTCATATCCTGGCTCTTCCACTTTAATGTACCCTCTTGA | 654 | 0.4786 | MLVTTEDKSHVVVVVDIHSNGCCHRSSAADEGCSDATDHSHEGQSSSHDPGTEIVGVCEKERGSSASECSVEVDLEEGSVLEVKVHLDNVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTVPPSGTAPPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g2355 | 217 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 86 | 152 | IPR011016 | GO:0008270 | |
Pvu8g2355 | 217 | PANTHER | ZINC FINGER, RING-CH-TYPE | 15 | 217 | - | - | |
Pvu8g2355 | 217 | CDD | RING_CH-C4HC3_MARCH | 94 | 146 | - | - | |
Pvu8g2355 | 217 | Pfam | RING-variant domain | 94 | 145 | IPR011016 | GO:0008270 | |
Pvu8g2355 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 154 | IPR013083 | - | |
Pvu8g2355 | 217 | SUPERFAMILY | RING/U-box | 91 | 148 | - | - | |
Pvu8g2355 | 217 | SMART | ringv_2 | 93 | 146 | IPR011016 | GO:0008270 | |
Pvu8g2355 | 217 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 15 | 217 | - | - | |
Pvu8g2355 | 217 | MobiDBLite | consensus disorder prediction | 34 | 53 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g2355 | Pvu-Chr8 | 54123895 | 54126428 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g2355 | 57 | 217 | C3H Transcription Factor Family | AT5G05830 | 67.284 | 5.81e-74 | 221 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g2355 | - | - | gmx:100818979 | 370.933 |