Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2344 ATGGAATTGGAAACCCTCTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTTGTGCAAGAAAGCCACAGCACAGAATGGACTAGAGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTCGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCACCTATCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGGCTTCTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCTAGCATCCATGATATAACCACTGTTAACCTTACCGAAACTGCTGCATCAGATAAGATCAAGTCTCCGTTATTTAACTTGTCGCCCATGATTACACCACAGCAGAAGCTGAATAGTATGTCAAAAGTACAGTTGGACTGGACTAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAATACTGATAACTTGTTTGTGTCCTCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGATAAAAGTTCCTGGTTTCGGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTCGGTATTCATGCACTGTAG 918 0.4368 MELETLYPPCFMPDSNWFVQESHSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRPAPIRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPLFNLSPMITPQQKLNSMSKVQLDWTSHCNDGSLMVFNPNTDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKIKVPGFGMAPRDFNNEAVFGIHAL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2344 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 286 IPR043363 -
Pvu8g2344 305 SMART sant 23 75 IPR001005 -
Pvu8g2344 305 SMART sant 123 173 IPR001005 -
Pvu8g2344 305 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Pvu8g2344 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Pvu8g2344 305 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Pvu8g2344 305 CDD SANT 126 170 IPR001005 -
Pvu8g2344 305 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Pvu8g2344 305 Gene3D - 19 86 - -
Pvu8g2344 305 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Pvu8g2344 305 Gene3D - 125 176 - -
Pvu8g2344 305 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Pvu8g2344 305 CDD SANT 26 72 IPR001005 -
Pvu8g2344 305 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Pvu8g2344 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 286 - -
Pvu8g2344 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2344 Pvu-Chr8 54023111 54025282 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g2344 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2344 - - gmx:778039 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2485 1 50018716 50021153 Pvu8g2344 8 54023111 54025282 ECH
Pvu8g1104 8 12313062 12315285 Pvu8g2344 8 54023111 54025282 ECH
Pvu8g2344 8 54023111 54025282 Pvu8g2344 8 54023111 54025282 ECH
Pvu1g2485 1 50018716 50021153 Pvu8g2344 8 54023111 54025282 PCT