Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2338 ATGAAACAGATCGAATACAGTACATGCAATGAAAAACATTACAAGATTAATATATATGCTATATTTTCTATGCGCAATTTGATGTTGTTTTTCTATGGAAAGGTATTATATATATATGCGCACGATTGGGATCTTTATGGTTCAGATAATCTCAGAACTAATAAAGTTGAGTTCAGAGGCAGAGAGAGAGAGAGAAAATCATATCTGGAAGAAAACATGGATGAGGGCATGTCAGGCTTTTGCATCAGATCAGGAAGTGTCCGTGGTAAAAGTGGAAGCACTACTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACCACTGAACAGGTTAAACTTCTAACTGAACTCTTCAGGTCAGGGCTCCGCACTCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTACGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCCAGGGAAAGACAGAAGCGCCGCAAGGTCTCCTTTGATGACAAGGATCTCATTCGTAGACAAAACTCCTTCAATACTTCCACACAAAGTCTTGCTGATACGTATCGAGTTTCAGAGCCAGATAGGGTGATTGAGACTCTTCAACTCTTTCCCTTGAACTCCTTCGGTGAATCTGAACAAGAGAACCTAAGGCTACATGCAAATGAATTTAGGGATAGTAGTACAATGTTTTCGTACATGATGGATGAACAAATAGAGCACCCACCATTGGACCTGCGCTTGAGCTTTCTGTAA 768 0.4154 MKQIEYSTCNEKHYKINIYAIFSMRNLMLFFYGKVLYIYAHDWDLYGSDNLRTNKVEFRGRERERKSYLEENMDEGMSGFCIRSGSVRGKSGSTTSSATGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDLIRRQNSFNTSTQSLADTYRVSEPDRVIETLQLFPLNSFGESEQENLRLHANEFRDSSTMFSYMMDEQIEHPPLDLRLSFL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2338 255 ProSiteProfiles 'Homeobox' domain profile. 99 164 IPR001356 GO:0003677
Pvu8g2338 255 Gene3D - 102 170 - -
Pvu8g2338 255 Pfam Homeodomain 103 163 IPR001356 GO:0003677
Pvu8g2338 255 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 73 243 IPR044555 GO:0003700|GO:0099402
Pvu8g2338 255 CDD homeodomain 105 165 IPR001356 GO:0003677
Pvu8g2338 255 PANTHER WUSCHEL-RELATED HOMEOBOX 7 73 243 - -
Pvu8g2338 255 SUPERFAMILY Homeodomain-like 104 166 IPR009057 -
Pvu8g2338 255 SMART HOX_1 101 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2338 Pvu-Chr8 53922329 53923714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2338 80 255 Wox Gene Family AT3G11260 54.167 2.46e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu8g2338 Homeodomain 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2338 - - pvu:PHAVU_008G226100g 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2492 1 50087033 50087793 Pvu8g2338 8 53922329 53923714 ECH
Pvu8g2338 8 53922329 53923714 Pvu8g2338 8 53922329 53923714 ECH
Pvu1g2492 1 50087033 50087793 Pvu8g2338 8 53922329 53923714 PCT