Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2311 ATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCCCCGAGGCTCGTGATGGAGAATAATGTTCAGAAGCAGAATCTCGTTGGTTTCTGCAACTTCTCGGCTTTGCTTGAACTGTCTGCATGCGATGATTTTGAAGGTTTCAAAAGAGAAGTGGATGAGAAGGGCTTGGATGTCAACGAGGCTGGGTTTTGGTATGGTAGAAGGATTGGGTCCAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACTAGAGTTCTCAAGTATATTCTTGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGCTCTGACAGGGCCACTGCTCTCCATTGTGCTGCCGCTGGGGGCTCTGAATCCTCACCCGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACCGGAAACAAGCCGGCTAATCTGGTTGCTCCAGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGTTCCTGAGGGGTGGTGAAAGAGATGAAGTGATGAGTCAGGAGATGGAGCTGCAGATGTTCTCGGCTCCTTTCTCAGCAAAAGAAGGTGGTGAGAAAAAAGAAGGAAGTGACAAGAAAGAGTATCCTGTTGATATATCCTTGCCAGATATCAACAGCGATGTGTACGGAAGCGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCGGGGGAGAACGCAAGGAGGAGAGACCCAAGGAAGTACCCTTATAGCTGTGTTCCTTGCCCAGAATTCCGCAAAGGGGCCTGCCAGAAGGTTGATTCCTGTGAGTATGCTCACGGTGTTTTTGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTTTGCAAGGACGAGACCGGCTGCAGTAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGCTCAGCTATGCCTTCACCAAAATCCTATTCTTCCACTGCACTAGACATGACAGCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTGCCCATGCCAACTGTTTCAACCCCACCCATGTCTCCACTGGCAGCAGCTTCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTTACTCCACCGTCCCTGCAGCTCCCTGGTAGCCGACTCAAGGCTGCTTTGAGCGCCAGGGATCTGGAGATGGAGATGGAACTGTTCGGTCTAGACAGTCCAGCTCGCCAACAACAACAGCAGCAGCAGCAACAGTTGATAGAAGAGATCGCCAGGATCTCTTCCCCGTCTTTCCGCAACAAGGAATTCAATAGGATTGCTGATTTGAATCCAACCAACCTCGATGACCTGTTGGCCTCTGCTGACCCTTCTATGTTGTCACAACTCCATGGACTTTCTGTGCAGACTTCAACACCCACCCAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCCTCCAACATCCCTTCCTCGCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAACTCCAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGCTTCATCGATCGCGGCGCTGCAATCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGTGTGAACGGAGATGAGCTAAACAAGCTGAGGAGATCTGCTTCATTTGGGTTCAGAAACAACGGGGTAAGTGCTTCCCCCATAGCTCACCCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCCTTGGTTAAGGATGTTCCTTCTGAGAGGAGGTCCGACATGTTTGGTGGTGAGAGACAACAGTATGATCTGAGTAAAGAGATGCTGCCACCGTGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2052 0.5078 MCSDSKSKLSSPRLVMENNVQKQNLVGFCNFSALLELSACDDFEGFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGTVDVNRACGSDRATALHCAAAGGSESSPEIVKLLLDAGADAESLDATGNKPANLVAPAFDSSSKSRRKAMELFLRGGERDEVMSQEMELQMFSAPFSAKEGGEKKEGSDKKEYPVDISLPDINSDVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKVDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSTALDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELFGLDSPARQQQQQQQQQLIEEIARISSPSFRNKEFNRIADLNPTNLDDLLASADPSMLSQLHGLSVQTSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAAIHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRRSASFGFRNNGVSASPIAHPEHVEPDVSWVHSLVKDVPSERRSDMFGGERQQYDLSKEMLPPWVEQLYIEQEQMVA* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2311 683 Gene3D - 272 334 - -
Pvu8g2311 683 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Pvu8g2311 683 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pvu8g2311 683 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pvu8g2311 683 Pfam Ankyrin repeats (3 copies) 74 142 IPR002110 GO:0005515
Pvu8g2311 683 Gene3D - 33 176 IPR036770 -
Pvu8g2311 683 PANTHER UNKEMPT FAMILY MEMBER 21 682 IPR045234 -
Pvu8g2311 683 SUPERFAMILY Ankyrin repeat 30 153 IPR036770 -
Pvu8g2311 683 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Pvu8g2311 683 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Pvu8g2311 683 SMART ANK_2a 76 106 IPR002110 GO:0005515
Pvu8g2311 683 SMART ANK_2a 111 143 IPR002110 GO:0005515
Pvu8g2311 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 21 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2311 Pvu-Chr8 53635661 53638839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2311 31 678 C2H2 Transcription Factor Family AT5G12850 38.787 4.57e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu8g2311 Ank_2 1.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2311 - - gmx:100783376 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2311 8 53635661 53638839 Pvu8g2311 8 53635661 53638839 ECH