Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2304 ATGGAAAGTTACCACTATTCTGGGTGGCCTCTTGCCACCAACATGGCTCAGTGCAACTCTGCACCAAACAGTGATCAATTATCCCCTTTTTCAGTTCCAACAACTCAAACACTCCCTCTTGCTTCTGACCCTGCCTCTCTTCAGTTTAGTGAGTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAGAGTTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTAGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGTGTGTGAGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGTAAAAATTGACTTCCACGAAGCTAAAGATGAAAGCTACACAAAAGTGAAGATATTGAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAAGTGTTCCCTGAGCTAATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCTAGTGTGGGTGGCAGAATCAAAAGCATATTGGTTCTTTGTTCAAAGGACAGTGAAGAGAACAGTGTTTGCCTTAGCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTGCTTCGTTATCCGTGGCCACTAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCACACTACGTACAACCATAA 774 0.4367 MESYHYSGWPLATNMAQCNSAPNSDQLSPFSVPTTQTLPLASDPASLQFSEFPLWPATIAEDRVASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMCVSKAITVPTETDEVKIDFHEAKDESYTKVKILKENIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYVQP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2304 257 Gene3D - 60 122 IPR036638 GO:0046983
Pvu8g2304 257 PANTHER TRANSCRIPTION FACTOR BHLH51 28 255 - -
Pvu8g2304 257 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983
Pvu8g2304 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 119 IPR036638 GO:0046983
Pvu8g2304 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Pvu8g2304 257 SMART finulus 72 121 IPR011598 GO:0046983
Pvu8g2304 257 PANTHER TRANSCRIPTION FACTOR BHLH30 28 255 IPR045847 GO:0003700|GO:0006355
Pvu8g2304 257 CDD bHLH_AtAIG1_like 61 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2304 Pvu-Chr8 53523280 53524919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2304 62 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.000 3.90e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g2304 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2304 - - gmx:100306102 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2304 8 53523280 53524919 Pvu8g2304 8 53523280 53524919 ECH
Pvu1g2527 1 50385367 50387821 Pvu8g2304 8 53523280 53524919 PCT