Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2303 ATGAGGGACGGCGGCGACGATCGCGTGAAGGGCTCGTGGAGTCCTCAGGAGGACGCCACGCTAATGAAATTGGTGAACGAGCACGGCCCGCGGAACTGGTCCGTCATCAGCAGCGGCATTCCAGGGCGCTCCGGCAAGTCCTGCCGGTTGCGATGGTGCAACCAGCTCAGCCCGGACGTGAGGCATCGCCCCTTCAGTCCGATGGAGGACGAGATCATCATCAAGGCTCACGCTGTTCACGGGAATAAGTGGGCCACCATCTCGCGCCTCCTCTCTGGACGCACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCCGGCGCCGTGGCACGACGGAGCACTCCTCGTCGTCGTCGGCGGCATCGCCGAGCACCAAGCGGCCCTCTCCCTTGGAGTTGTGCTATCCTCTGAAGAAACAGCGTGTGGAGAAGGAAAACGAGGAAGAGTGCATGGCGATTCCCCTTATGAAGCCGTTGAGTCTTTTTCCGTCTGGGGAAAAATCGGAGGGAGAAATGATGGAAGAGGAAGAAAAGGAGGAAGAAAGAGAAGTAGAAGAGTTTGAAGTGAATAATATTAACACGGCTTCGGATCAAGATTACTTTCTGCAGATGATGCAGCAGATGATAGCTGATGAGGTTCGGAATTATGTTGATAGTTTGCGTCATCAAAGGCAACATGAAATCATTCATCCTGGGTTAAAGTTTCATCCCAAATAA 720 0.5417 MRDGGDDRVKGSWSPQEDATLMKLVNEHGPRNWSVISSGIPGRSGKSCRLRWCNQLSPDVRHRPFSPMEDEIIIKAHAVHGNKWATISRLLSGRTDNAIKNHWNSTLRRRGTTEHSSSSSAASPSTKRPSPLELCYPLKKQRVEKENEEECMAIPLMKPLSLFPSGEKSEGEMMEEEEKEEEREVEEFEVNNINTASDQDYFLQMMQQMIADEVRNYVDSLRHQRQHEIIHPGLKFHPK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2303 239 Gene3D - 9 61 - -
Pvu8g2303 239 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Pvu8g2303 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 60 IPR017930 -
Pvu8g2303 239 PANTHER OS01G0850400 PROTEIN 7 208 - -
Pvu8g2303 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Pvu8g2303 239 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Pvu8g2303 239 CDD SANT 64 107 IPR001005 -
Pvu8g2303 239 Coils Coil 171 191 - -
Pvu8g2303 239 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Pvu8g2303 239 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Pvu8g2303 239 MobiDBLite consensus disorder prediction 101 133 - -
Pvu8g2303 239 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Pvu8g2303 239 SMART sant 9 58 IPR001005 -
Pvu8g2303 239 SMART sant 61 109 IPR001005 -
Pvu8g2303 239 Gene3D - 63 131 - -
Pvu8g2303 239 MobiDBLite consensus disorder prediction 101 127 - -
Pvu8g2303 239 PANTHER MYB PROTEIN-RELATED 7 208 - -
Pvu8g2303 239 CDD SANT 12 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2303 Pvu-Chr8 53512829 53513548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2303 7 117 MYB Transcription Factor Family AT4G37260 72.973 6.50e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g2303 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2303 - - vra:106763298 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2303 8 53512829 53513548 Pvu8g2303 8 53512829 53513548 ECH