Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2301 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACGCCCTCCACTCCCAGCCAAACATCTAACACTTCCAACAGCACCAATGACACCACCAACAACAAAAGTACTCGTAAATGCAAAGGCAAAGGTGGCCCTGACAACAACAAATTTAGGTACCGCGGCGTTAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTAGGCACCTTCGCCACCGCTGAAGACGCCGCCAGAGCCTACGACCGCGCCGCCCTCATCCTCTATGGTTCCCGGGCCCAGCTCAATCTCGAACCCTCCGGTTCCTCTCCTCACTCTTCCTCATCCCGTACCACCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCCCGCCCCACAGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTGCCCTACCCTTGCGCCGGCGTGTATGCCACCACTTTCAATTACACCCATCAGGTGATGTGCCCTAACGAGAATAGTAATAATACAGTGCATGTTCATCATCATCATCATCGTCGTCCTGAGGAAGTGGTGCAAGTGTCGCATGCTCTATCAACATCATATCAAAATTCGGAATCTGATGTGAGTTTAGGTGGGAATAATACTACTGCTGATAGTTCCAGTAGATCAACCTCGTACCAAAGGCATGGTCATCAGGATAATAACCGTGTGCATGCTCAACATAGCGATTCATCGAAGCATCAGCAACATCAGAACAGCGTTGTCGATGGAGTGGATTCCGCTGTGGGTTCGGGTGAATCTTCTCAGGTAAATATGGAGGCTTCGGTGGATCCGGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCTTCTGTGTGGCCGTTGGCGAGTGAGGCTGATTACAGTGGCAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCCTTCGGAGAAATTTTAG 990 0.5242 MASLQPQPQETKPTATTATPSTPSQTSNTSNSTNDTTNNKSTRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLEPSGSSPHSSSSRTTSSTQTLRPLLPRPTGFAFNFPFHAAALPYPCAGVYATTFNYTHQVMCPNENSNNTVHVHHHHHRRPEEVVQVSHALSTSYQNSESDVSLGGNNTTADSSSRSTSYQRHGHQDNNRVHAQHSDSSKHQQHQNSVVDGVDSAVGSGESSQVNMEASVDPDLSLVGTVGLGSSSSVWPLASEADYSGSLWDYNDPFFFDPSEKF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2301 329 MobiDBLite consensus disorder prediction 1 40 - -
Pvu8g2301 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 9 323 - -
Pvu8g2301 329 MobiDBLite consensus disorder prediction 200 235 - -
Pvu8g2301 329 MobiDBLite consensus disorder prediction 113 135 - -
Pvu8g2301 329 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 MobiDBLite consensus disorder prediction 1 60 - -
Pvu8g2301 329 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Pvu8g2301 329 MobiDBLite consensus disorder prediction 41 59 - -
Pvu8g2301 329 MobiDBLite consensus disorder prediction 181 277 - -
Pvu8g2301 329 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 323 - -
Pvu8g2301 329 MobiDBLite consensus disorder prediction 253 277 - -
Pvu8g2301 329 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 MobiDBLite consensus disorder prediction 236 252 - -
Pvu8g2301 329 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Pvu8g2301 329 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2301 Pvu-Chr8 53485082 53486071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2301 43 322 AP2-EREBP Transcription Factor Family AT2G40220 42.763 2.80e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g2301 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2301 K09286 - gmx:100779779 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2301 8 53485082 53486071 Pvu8g2301 8 53485082 53486071 ECH