Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2299 ATGAAGGGTTACGAGCCACGTTCAAGTTCCTCTTGTGCAGCCTGCAAGTTCTTGAAGAGACGATGCATACCCAATTGTATATTTGCACCTTACTTTCGCTCTGATGAGTGCAAGAAATTTGCCAAGGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTTCCCGAGGAGCAGAGAGAGGACACGGTGAATTCTCTTGCTTATGAAGCAGAAGCCAGGCTCAGGGACCCCATTTATGGATGTATTGGTGCCATAGCTCTTCTGCAGAGGAAGATGGTGGAGCTTCAACACGACCTTGCCATTGCTAAGGACCGTCTTGCTCGCTATGCTGCTGCTGCCACCACTCCTTCCACCACTACCACTACCGCCACCACCACCACCAATACCTTCAATTCCCATGTTAGTTTGCCACCCTTCCCTGAATTTTTCTCTTGCACCGATTTCAACGACAACTTCTTCCACAACTCTTCCTCTCAATCTCCGCCATTGACCAGACATGAAATGGTCGATGATTTCATTCCAATCCCTTATATATTATGA 555 0.4775 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAATTPSTTTTTATTTTNTFNSHVSLPPFPEFFSCTDFNDNFFHNSSSQSPPLTRHEMVDDFIPIPYIL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2299 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 164 - -
Pvu8g2299 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 164 - -
Pvu8g2299 184 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Pvu8g2299 184 Coils Coil 90 117 - -
Pvu8g2299 184 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2299 Pvu-Chr8 53458978 53459532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2299 1 116 AS2 family AT3G11090 75.862 5.70e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g2299 LOB 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2299 - - gmx:100777635 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2299 8 53458978 53459532 Pvu8g2299 8 53458978 53459532 ECH