Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2298 ATGAATGATGTTCTATCTGCTATGATGGTTTCCCAAGGCTTGTTACCATCTGGATCTCTGCTAGATTCTTTGATTCACATATCCAAAGAAGTTGACTCGATGGAGAAGCTTCCCTTCGTACACACCAGAAACGTTTCATCCATGATCAGGAGGGTCAAGATTCTTTCTTCTTTGTTTGAAGAGATGCAAGAAGCGGGTACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTTAAGGTTTTGATCCAAGATTGCAAGGATGGAAGCTCTCTTTGGAGTCTCATACAGTTAGAATTCATTTCCAACCAATTTTACGTGCTAGTAAAGGAGATGGGAAGGGCCCTTGAAATCCTTCCTTTGAGTTTGCTTAATGTAACATCAGATATTAGGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAACGAAGAGAACAACTTAAACAAGCAATGACCAACAATAGTTTACAAAACAAGAAGAACAAAGGGTTTATTGACTTTGCAAAAGTGGAAGAAATACTTAGCAGCATTGGTCTGAGAACCCCATCGGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTGATCATTGTCTCCAATATAAACAACCTCGTATCGTTGGTCTCTTATTCCAAATCCATGATATTCAGAGATGGAGAGAGTGGTAGAAATGAAGAAGATTGTAAGCCACTGTCTTCATTTTTGTATAGCAAAGTACATGATAGTTCTTCATCCTCTCAGTCCATGACACCGAATGTTCCTGATGAATTTCGTTGTCCAATATCACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCAGGGCACACATATGATAGAACATCAATTGCACAGTGGATAAACTCTGGTCATCATACTTGCCCCAAAAGTGGGCAAAGGTTAATTCACACTGCTTTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCTGTGAATGAGCCTACGACCGAGGGAAACAACAAGAAGAAGAAAAACTCGAAGGAGGAGGCTATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAGTTGGCAACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGAATGGTTAACCGAAGTGTCATAGCTGAGGTAGGAGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACGTTGTTCAACCTCTCGATATTTGACAACAACAAGATTTTGATCATGGCGGCAGGAGCAGTTGATAGCATAGTAGAAGTACTTGAATCAGGGAAGACGATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGTTTGTCTATGGTGGATGAGCTCAAAGTGCAAATTGGAGGAAGATCAAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCATCTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGTTAGTATTGTAAAGGGTGGGGCAGTTCCTATGCTGGTTGAGTTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTTTGCTCCTTGGTTGCTCTGAGGGGTTAGAAGAGATAAGAAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTATGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAACAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGATCTTTGAGAGCTAGGAGAAAAGCAGATGCACTGCTCAGACTCCTCAATAGGTGCTGCTCTCAGCCTCATCAATCTCTTTGA 2052 0.424 MNDVLSAMMVSQGLLPSGSLLDSLIHISKEVDSMEKLPFVHTRNVSSMIRRVKILSSLFEEMQEAGTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALEILPLSLLNVTSDIREQVELLHKQAKRAELLIDPRELQRREQLKQAMTNNSLQNKKNKGFIDFAKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIIVSNINNLVSLVSYSKSMIFRDGESGRNEEDCKPLSSFLYSKVHDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNEPTTEGNNKKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDELKVQIGGRSRAIPALVGLLKEGTSIGKKDAASALFNLAVYNPNKVSIVKGGAVPMLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLMRFGSVKGKENSITLLLGLCKQEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHQSL* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2298 683 Gene3D - 20 132 IPR036537 GO:0007166
Pvu8g2298 683 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
Pvu8g2298 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Pvu8g2298 683 Gene3D - 534 675 IPR011989 -
Pvu8g2298 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Pvu8g2298 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Pvu8g2298 683 CDD RING-Ubox_PUB 287 329 IPR045210 -
Pvu8g2298 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Pvu8g2298 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Pvu8g2298 683 SMART arm_5 548 588 IPR000225 GO:0005515
Pvu8g2298 683 SMART arm_5 507 547 IPR000225 GO:0005515
Pvu8g2298 683 SMART arm_5 464 505 IPR000225 GO:0005515
Pvu8g2298 683 SMART arm_5 423 463 IPR000225 GO:0005515
Pvu8g2298 683 SMART arm_5 589 630 IPR000225 GO:0005515
Pvu8g2298 683 SMART arm_5 382 421 IPR000225 GO:0005515
Pvu8g2298 683 Gene3D - 365 532 IPR011989 -
Pvu8g2298 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Pvu8g2298 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Pvu8g2298 683 SUPERFAMILY RING/U-box 270 357 - -
Pvu8g2298 683 PANTHER U BOX DOMAIN-CONTAINING 17 680 - -
Pvu8g2298 683 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2298 Pvu-Chr8 53446019 53448594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2298 18 682 U-box Gene Family AT3G46510 37.425 5.16e-128 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2298 - - gmx:100793498 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2298 8 53446019 53448594 Pvu8g2298 8 53446019 53448594 ECH