Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2286 ATGGGTGGAAATCCCCCTTGTGGCTCATGCAAATTGCTGAGACGCAAGTGCACAGAAGATTGCATCTTCGCTCCTTATTTTCTTTCTGATGATCCTCAAAAGTTTGCCATAGTTCATAAGGTTTTTGGTGCTAGCAATCTTAGCAAAATGTTGCAGGAACTTCCAGTTGAGCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAGTGCTAGAGTGAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCTTATTTGCAGAATCAAGTTGCTGATCTTAAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACAATGCATTCAGATAGATAAGAAGTCATTGATTGTACCCTCAGAAGAAACTGATCTACACAACTCTGATCATCTTCAAAATAACTTCTCTCAGTTTCCTAATTTTGGTACTTCTAACAGTGTAGTTCATCATCCCCCTAATTATCTTAGACCATAA 474 0.4072 MGGNPPCGSCKLLRRKCTEDCIFAPYFLSDDPQKFAIVHKVFGASNLSKMLQELPVEQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLKMQLAVAQAEIQCIQIDKKSLIVPSEETDLHNSDHLQNNFSQFPNFGTSNSVVHHPPNYLRP* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2286 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pvu8g2286 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pvu8g2286 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 123 - -
Pvu8g2286 157 Coils Coil 85 112 - -
Pvu8g2286 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 3 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2286 Pvu-Chr8 53342368 53343134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2286 3 130 AS2 family AT2G30130 71.875 1.78e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g2286 LOB 9.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2541 1 50490786 50491694 Pvu8g2286 8 53342368 53343134 ECH
Pvu8g2286 8 53342368 53343134 Pvu8g2286 8 53342368 53343134 ECH
Pvu1g2541 1 50490786 50491694 Pvu8g2286 8 53342368 53343134 PCT