Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2282 ATGGTGCAAAGAAAAAGACGATTAGATCAAACCAAGCATCCATTCAATTCTCACCCCTTTGAAGCAGTTGCCTATGGCAAATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGAATCCTGTCTATGCATTTTGTAGATAATCATTATATGACTATGGAGAAAGGACCCTTGTCAGACATTAGGATAAGTTCAAGGAAAGCTACTTTATCTGATTGCTCCCGTTTTCTGCGTCCTGGAATTGACATATGTGTACTATCTGCCCCTCAACAATCTACTGATTCAGATGCAATTGTTATTGACCCTGTCTGGACTGATGCTAAAATAAGCTCTATACAAAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCGCTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTCCAGAAACTTGAAAATACTCCTTGTGAAGATCAGCACTACCGGTGGGCATCATCCGAGGACTGTTCCATTATATCACACACTAAATTGCTTTTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCCTCAGCTTTAAAGAAGATTTCATTTTGCTTTAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGTTAGCACTTCATTGAATAAAGATTTTCACATTGATGTTGTGAATTTCAGAACAGAAAGTGGCATGTTAGTACCCTTTGTTTCTCAAGTAGCTACACCTGTAACTAAGAAGATTGGTCATGTACAGGAATCCCATGAAGATAAAGTATCACTATCTTATAGTGTTGAGGGCTTGCGGCGTTCTAAGCGTCGGAATGTTCAACCAGAGCGTTACCTTGGTTGTGATAATGATGCTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCGGTGAAGATAGACACATGGAAAGATGAGGATGACCAAGAACTACATATACCATTAGCATACCTGTTTGGTTTGCAGAAGAACTTTCTAGAAGAAGTTACTGATAATCATCAAAAGAAGGCAAGTACCTGCCGGGAGCTTGTGATGTATAAGAGGAGAATGGCCAAGAATCAGGAGGTAAAGTCAGGAGAAAATTATGATAATGAAGATCAAAATCGACTTGCTATTATTCCTATTCCTGATCAAGATGATCCGCTACTTGTTGAGCATTGTGATGTTGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTAAACATTATTCCAAATATTATCATCTAACTAGTACCCCCAATAAATCAACAAGGAAAGATGATAAATTTTTACCTTTTGAGCCAAATAACCATCCTTCAACGTCAGATGATGTAGAAAAGAATGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCTAAGTCACAGAGGAAGAGTTTATGTGGTTTGGATGATATAGTGGATCTTGGAAATAAATGGGAAGGGATGAGACCCAATAAAGGAGTTCGAAGGAAAAAATCTCATGGAGCATATTCAAGAAGTAGAGATCATGGAGAAGGGAAAAGATACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTAAAGAATATTAATACAAAACCTACTCAAGAAGAACCATCTATCACTGACCAGTGGAAGGAAAACAACACAACTAGTACCATTGGGCAAAAGACGGGAACAGGAACTCTTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTTTCATTGGCGTCATGCTATCTGGAAGAGGATTCAAATGCTGCGTTTATCACTGACACTGTGGAAAAGCCGAATGAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTAGTGAGCACTGAGATCAAATATATTACGCCACCCTTTATTCAACATTCGGCCTGGCACCAAGAGGAGAAGCACAGTGCTGAAGAAGATTCACGAATCAGAGTTGATGAGGATGATGATTTGAATCTTTTCCCCGCCCTAGATTCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAATAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTCTGGCAAAACATTGCAGGGTCCATGGAGCCCAGACTTATGGAAGCAAAATCCAAAAGAATGGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTCCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATTAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGGACATACCGTGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGTCTTGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATAATGGGTTACACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTACTGAGGGAAAGCCCTGGGATCATGGTACTGGATGAAGGGCACAATCCCAGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAATAATTTCTGTGAATACTTTAATACTCTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTAGACCCCAAATACAGGAGAAAAGGGAAAGTGGCAAAAAAGGCAAGTCATTTACTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATCGACTCTGGTAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTGCTGATGGTCTACCTGGTTTACAAATTTATACATTGTTAATGAATTCAACCGATACACAACATGAGATTTTGCATAAACTGCACAAGAAAATGTCCCAGTGCAATGGTTACCCTCTGGAATTAGAGCTTTTGATAACTCTTGGTTCAATACATCCCTGGCTGGTCAAAACGGCAGTATGTGCTCAGAAGTTTTTCTCTTCTGAGCAACTGATGGAGCTAGAAAAATGCAAATTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAGAAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTGAAGCTATTTGTGGAGTATTTTGAGAAGTACTTTGGATGGCTAAGAGGTAAGGAAGTTTTGGTTCTAACTGGGGAATTAGAGCTCTTTGAAAGGGGTAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTAGCAAAGATACTCCTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGAGTTATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCTCGGGCTTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGACAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTCAGTGAAGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGACAGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 3933 0.3961 MVQRKRRLDQTKHPFNSHPFEAVAYGKWQAVEFIKIEAGILSMHFVDNHYMTMEKGPLSDIRISSRKATLSDCSRFLRPGIDICVLSAPQQSTDSDAIVIDPVWTDAKISSIQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLENTPCEDQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASALKKISFCFRCLEEKLVYQILGRDTVSTSLNKDFHIDVVNFRTESGMLVPFVSQVATPVTKKIGHVQESHEDKVSLSYSVEGLRRSKRRNVQPERYLGCDNDASEIDVGSFRNRPPVKIDTWKDEDDQELHIPLAYLFGLQKNFLEEVTDNHQKKASTCRELVMYKRRMAKNQEVKSGENYDNEDQNRLAIIPIPDQDDPLLVEHCDVEHCDDLDDKVTRSYGHESPKHYSKYYHLTSTPNKSTRKDDKFLPFEPNNHPSTSDDVEKNDDLSLRYHYSYGVPKSQRKSLCGLDDIVDLGNKWEGMRPNKGVRRKKSHGAYSRSRDHGEGKRYNYKDRTLNAAAYKDLINSYLKNINTKPTQEEPSITDQWKENNTTSTIGQKTGTGTLDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAAFITDTVEKPNEGCPHDFRMNEEIGIYCYRCGLVSTEIKYITPPFIQHSAWHQEEKHSAEEDSRIRVDEDDDLNLFPALDSPEGPVSQENDNVWALIPELRIKLHAHQKKAFEFLWQNIAGSMEPRLMEAKSKRMGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSGKGRERQQGLKMLRNVTNGFIDVYEGGSADGLPGLQIYTLLMNSTDTQHEILHKLHKKMSQCNGYPLELELLITLGSIHPWLVKTAVCAQKFFSSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVRKEKVLIFCHNIAPVKLFVEYFEKYFGWLRGKEVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2282 1310 MobiDBLite consensus disorder prediction 509 534 - -
Pvu8g2282 1310 SMART helicmild6 1143 1228 IPR001650 -
Pvu8g2282 1310 CDD SF2_C_SNF 1103 1239 - -
Pvu8g2282 1310 Pfam SNF2-related domain 742 996 IPR000330 GO:0005524|GO:0140658
Pvu8g2282 1310 Gene3D - 1033 1310 IPR027417 -
Pvu8g2282 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 753 953 IPR014001 -
Pvu8g2282 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 955 IPR027417 -
Pvu8g2282 1310 Gene3D - 708 994 IPR038718 -
Pvu8g2282 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1305 IPR044567 GO:0080188
Pvu8g2282 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1305 - -
Pvu8g2282 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1115 1275 IPR001650 -
Pvu8g2282 1310 CDD DEXHc_ATRX-like 728 958 - -
Pvu8g2282 1310 Pfam Helicase conserved C-terminal domain 1111 1227 IPR001650 -
Pvu8g2282 1310 SMART ultradead3 724 958 IPR014001 -
Pvu8g2282 1310 MobiDBLite consensus disorder prediction 436 470 - -
Pvu8g2282 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1290 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2282 Pvu-Chr8 53300729 53305730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2282 1153 1246 RAD5 or RAD16-like Gene Family AT5G43530 40.426 3.44e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g2282 SNF2_N 1.1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2282 K10875 - gmx:100811703 2203.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2282 8 53300729 53305730 Pvu8g2282 8 53300729 53305730 ECH
Pvu1g2547 1 50545702 50550616 Pvu8g2282 8 53300729 53305730 PCT