Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g2282 | ATGGTGCAAAGAAAAAGACGATTAGATCAAACCAAGCATCCATTCAATTCTCACCCCTTTGAAGCAGTTGCCTATGGCAAATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGAATCCTGTCTATGCATTTTGTAGATAATCATTATATGACTATGGAGAAAGGACCCTTGTCAGACATTAGGATAAGTTCAAGGAAAGCTACTTTATCTGATTGCTCCCGTTTTCTGCGTCCTGGAATTGACATATGTGTACTATCTGCCCCTCAACAATCTACTGATTCAGATGCAATTGTTATTGACCCTGTCTGGACTGATGCTAAAATAAGCTCTATACAAAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCGCTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTCCAGAAACTTGAAAATACTCCTTGTGAAGATCAGCACTACCGGTGGGCATCATCCGAGGACTGTTCCATTATATCACACACTAAATTGCTTTTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCCTCAGCTTTAAAGAAGATTTCATTTTGCTTTAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGTTAGCACTTCATTGAATAAAGATTTTCACATTGATGTTGTGAATTTCAGAACAGAAAGTGGCATGTTAGTACCCTTTGTTTCTCAAGTAGCTACACCTGTAACTAAGAAGATTGGTCATGTACAGGAATCCCATGAAGATAAAGTATCACTATCTTATAGTGTTGAGGGCTTGCGGCGTTCTAAGCGTCGGAATGTTCAACCAGAGCGTTACCTTGGTTGTGATAATGATGCTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCGGTGAAGATAGACACATGGAAAGATGAGGATGACCAAGAACTACATATACCATTAGCATACCTGTTTGGTTTGCAGAAGAACTTTCTAGAAGAAGTTACTGATAATCATCAAAAGAAGGCAAGTACCTGCCGGGAGCTTGTGATGTATAAGAGGAGAATGGCCAAGAATCAGGAGGTAAAGTCAGGAGAAAATTATGATAATGAAGATCAAAATCGACTTGCTATTATTCCTATTCCTGATCAAGATGATCCGCTACTTGTTGAGCATTGTGATGTTGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTAAACATTATTCCAAATATTATCATCTAACTAGTACCCCCAATAAATCAACAAGGAAAGATGATAAATTTTTACCTTTTGAGCCAAATAACCATCCTTCAACGTCAGATGATGTAGAAAAGAATGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCTAAGTCACAGAGGAAGAGTTTATGTGGTTTGGATGATATAGTGGATCTTGGAAATAAATGGGAAGGGATGAGACCCAATAAAGGAGTTCGAAGGAAAAAATCTCATGGAGCATATTCAAGAAGTAGAGATCATGGAGAAGGGAAAAGATACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTAAAGAATATTAATACAAAACCTACTCAAGAAGAACCATCTATCACTGACCAGTGGAAGGAAAACAACACAACTAGTACCATTGGGCAAAAGACGGGAACAGGAACTCTTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTTTCATTGGCGTCATGCTATCTGGAAGAGGATTCAAATGCTGCGTTTATCACTGACACTGTGGAAAAGCCGAATGAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTAGTGAGCACTGAGATCAAATATATTACGCCACCCTTTATTCAACATTCGGCCTGGCACCAAGAGGAGAAGCACAGTGCTGAAGAAGATTCACGAATCAGAGTTGATGAGGATGATGATTTGAATCTTTTCCCCGCCCTAGATTCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAATAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTCTGGCAAAACATTGCAGGGTCCATGGAGCCCAGACTTATGGAAGCAAAATCCAAAAGAATGGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTCCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATTAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGGACATACCGTGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGTCTTGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATAATGGGTTACACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTACTGAGGGAAAGCCCTGGGATCATGGTACTGGATGAAGGGCACAATCCCAGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAATAATTTCTGTGAATACTTTAATACTCTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTAGACCCCAAATACAGGAGAAAAGGGAAAGTGGCAAAAAAGGCAAGTCATTTACTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATCGACTCTGGTAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTGCTGATGGTCTACCTGGTTTACAAATTTATACATTGTTAATGAATTCAACCGATACACAACATGAGATTTTGCATAAACTGCACAAGAAAATGTCCCAGTGCAATGGTTACCCTCTGGAATTAGAGCTTTTGATAACTCTTGGTTCAATACATCCCTGGCTGGTCAAAACGGCAGTATGTGCTCAGAAGTTTTTCTCTTCTGAGCAACTGATGGAGCTAGAAAAATGCAAATTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAGAAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTGAAGCTATTTGTGGAGTATTTTGAGAAGTACTTTGGATGGCTAAGAGGTAAGGAAGTTTTGGTTCTAACTGGGGAATTAGAGCTCTTTGAAAGGGGTAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTAGCAAAGATACTCCTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGAGTTATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCTCGGGCTTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGACAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTCAGTGAAGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGACAGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA | 3933 | 0.3961 | MVQRKRRLDQTKHPFNSHPFEAVAYGKWQAVEFIKIEAGILSMHFVDNHYMTMEKGPLSDIRISSRKATLSDCSRFLRPGIDICVLSAPQQSTDSDAIVIDPVWTDAKISSIQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLENTPCEDQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASALKKISFCFRCLEEKLVYQILGRDTVSTSLNKDFHIDVVNFRTESGMLVPFVSQVATPVTKKIGHVQESHEDKVSLSYSVEGLRRSKRRNVQPERYLGCDNDASEIDVGSFRNRPPVKIDTWKDEDDQELHIPLAYLFGLQKNFLEEVTDNHQKKASTCRELVMYKRRMAKNQEVKSGENYDNEDQNRLAIIPIPDQDDPLLVEHCDVEHCDDLDDKVTRSYGHESPKHYSKYYHLTSTPNKSTRKDDKFLPFEPNNHPSTSDDVEKNDDLSLRYHYSYGVPKSQRKSLCGLDDIVDLGNKWEGMRPNKGVRRKKSHGAYSRSRDHGEGKRYNYKDRTLNAAAYKDLINSYLKNINTKPTQEEPSITDQWKENNTTSTIGQKTGTGTLDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAAFITDTVEKPNEGCPHDFRMNEEIGIYCYRCGLVSTEIKYITPPFIQHSAWHQEEKHSAEEDSRIRVDEDDDLNLFPALDSPEGPVSQENDNVWALIPELRIKLHAHQKKAFEFLWQNIAGSMEPRLMEAKSKRMGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSGKGRERQQGLKMLRNVTNGFIDVYEGGSADGLPGLQIYTLLMNSTDTQHEILHKLHKKMSQCNGYPLELELLITLGSIHPWLVKTAVCAQKFFSSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVRKEKVLIFCHNIAPVKLFVEYFEKYFGWLRGKEVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK* | 1311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g2282 | 1310 | MobiDBLite | consensus disorder prediction | 509 | 534 | - | - | |
Pvu8g2282 | 1310 | SMART | helicmild6 | 1143 | 1228 | IPR001650 | - | |
Pvu8g2282 | 1310 | CDD | SF2_C_SNF | 1103 | 1239 | - | - | |
Pvu8g2282 | 1310 | Pfam | SNF2-related domain | 742 | 996 | IPR000330 | GO:0005524|GO:0140658 | |
Pvu8g2282 | 1310 | Gene3D | - | 1033 | 1310 | IPR027417 | - | |
Pvu8g2282 | 1310 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 753 | 953 | IPR014001 | - | |
Pvu8g2282 | 1310 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 679 | 955 | IPR027417 | - | |
Pvu8g2282 | 1310 | Gene3D | - | 708 | 994 | IPR038718 | - | |
Pvu8g2282 | 1310 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED | 20 | 1305 | IPR044567 | GO:0080188 | |
Pvu8g2282 | 1310 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 | 20 | 1305 | - | - | |
Pvu8g2282 | 1310 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1115 | 1275 | IPR001650 | - | |
Pvu8g2282 | 1310 | CDD | DEXHc_ATRX-like | 728 | 958 | - | - | |
Pvu8g2282 | 1310 | Pfam | Helicase conserved C-terminal domain | 1111 | 1227 | IPR001650 | - | |
Pvu8g2282 | 1310 | SMART | ultradead3 | 724 | 958 | IPR014001 | - | |
Pvu8g2282 | 1310 | MobiDBLite | consensus disorder prediction | 436 | 470 | - | - | |
Pvu8g2282 | 1310 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1028 | 1290 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g2282 | Pvu-Chr8 | 53300729 | 53305730 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g2282 | 1153 | 1246 | RAD5 or RAD16-like Gene Family | AT5G43530 | 40.426 | 3.44e-11 | 66.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Pvu8g2282 | SNF2_N | 1.1e-16 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g2282 | K10875 | - | gmx:100811703 | 2203.71 |