Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2277 ATGACTACTGCAGCCAAGAAGTACTTCTTCAAAATCTTCTTTCCAGAGAAACACTCTGAAAGAATGGTTATTCCAAGTTCTTTTGTGAAGTCTAGACGCTTACGAAGAAGGAGAATCCCTGAAGATATCATCCTCAGAAATGTTAGTGGAGGGGTTTGGTGTGTCAAAACTCGTCTCGTTGGACACAAAATCTACTTTCAAGAGGGTTGGAAGGTTTTTCAAGCAGAAAACTGTATAGGAAAAGCAGATTTTCTACTTTTCAAGTATGATGGGACCAATGTATTCAAGGTGGTAATTCTTGAACAATCATCACGCTGTGAAAGGAGAGAAGTTGAAGAAGATGAGGTGATAGATATTACCGAAGAGGAAGAGAATGAAAAAACTGAGGACTATGTGATGGAGGACGAGGAAGATAGTGATTATGAGAATGAGTATTATGAGGATGAAGATGACAATTATACAGAAATGGAAGAAGAGAGTGAAGAAGAACACATGAAGAGTCAAAATCATCATAGTAGAGCTAGCAATAGGGATAGTGCAACAAGTTCCATCCCCAAGATTGAAGGTCCTCATCTTGAAGACTACGAATTTGATCCACAAATGTATATTCAGCCTGAAAATCCATACTTTGAAGCAAAACTGTATAAAAATAGACCCAACGAATTGCATATTCCAGCAAATGTCTTGAGAGAGTCGTCGCTTACTTTTCCAGAAGAGATCACCCTTTCACGTTGCAAATGCTTCCAACGTGAGGATATTCGAAGAAATGAATTAGGAGACAATCATTTGGGCTTTTCACGACAGACACCAATGTATTCGGAAGTAACAAAAGTGTCTGAGTGGCAAGATGGTCGAGTATGTATTAAAGGATGGACAAACTTTTGTACAAAGAACAAGATCAAAGAAAATGATGTATGCATCTGTGAAATTGTATCAGGGAAACACCAAATAGTAAGAACACTTCAGGTGCACGTGCTTGGTGCTAGGAACGAATGA 996 0.3865 MTTAAKKYFFKIFFPEKHSERMVIPSSFVKSRRLRRRRIPEDIILRNVSGGVWCVKTRLVGHKIYFQEGWKVFQAENCIGKADFLLFKYDGTNVFKVVILEQSSRCERREVEEDEVIDITEEEENEKTEDYVMEDEEDSDYENEYYEDEDDNYTEMEEESEEEHMKSQNHHSRASNRDSATSSIPKIEGPHLEDYEFDPQMYIQPENPYFEAKLYKNRPNELHIPANVLRESSLTFPEEITLSRCKCFQREDIRRNELGDNHLGFSRQTPMYSEVTKVSEWQDGRVCIKGWTNFCTKNKIKENDVCICEIVSGKHQIVRTLQVHVLGARNE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2277 331 MobiDBLite consensus disorder prediction 114 158 - -
Pvu8g2277 331 SMART B3_2 9 103 IPR003340 GO:0003677
Pvu8g2277 331 CDD B3_DNA 7 100 IPR003340 GO:0003677
Pvu8g2277 331 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 2 321 - -
Pvu8g2277 331 Gene3D - 1 106 IPR015300 -
Pvu8g2277 331 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Pvu8g2277 331 MobiDBLite consensus disorder prediction 159 173 - -
Pvu8g2277 331 Pfam B3 DNA binding domain 9 99 IPR003340 GO:0003677
Pvu8g2277 331 PANTHER B3 DOMAIN-CONTAINING 2 321 - -
Pvu8g2277 331 Gene3D - 195 329 IPR015300 -
Pvu8g2277 331 MobiDBLite consensus disorder prediction 111 197 - -
Pvu8g2277 331 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Pvu8g2277 331 SUPERFAMILY DNA-binding pseudobarrel domain 203 324 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2277 Pvu-Chr8 53257125 53258890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2277 9 328 B3 DNA Binding Superfamily AT5G60140 24.854 4.30e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g2277 B3 5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2277 - - gmx:100810634 386.726