Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2223 ATGGAAAACTCAGACCACGACGAACCCGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCTCGCACGTCTCGAAACTCCATCAACTCTCCTACCACCAACAAAACCGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAACTTGTTCAACAGATAGACGTCCAGAAACATGCTTTGCACGGCCTTGAAGGAAAAATTAGAGAACTAAAAGGAAAGCAAAGTTCTTATGATGACATGTTAATTGCTTTGAACCAACTTTGGACTCAGTTGGTTGACGACATGATTCTTCTTGGAATACAAGCTGGGAGAGGCAAAGGCAAAGACACATTGCAATATTTGACTGACATTGAAAAACCTAAAGGTTCACTTCCTTTATGTCCCGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCCATTAAAGGAATCAGTGATGACGAGCTCACTAGTTATGTTGAGGAGGCCCTTGCTTTGCGTCAATCATCTACAATGGAGTTGTTGAAACTTCTGAAAGTTATTATTGATGATCAGATGGAAAGATCAGGTGGTATAGCTCAGACTTTACACGGAGATTTATCTTCAGAAGATGCTATAACCCTAATGACTAAGATTGATGATATGATTAAAGAGGAGGCAAATAATTTACAGGAAGTGATTGATACTCTCCATGCAAAGCATAATGAGTATACTGTTGGTATTCAAACTTCTATCAATGAGTGCTTACAAGAAAAATCTGACATTAAACACCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTAGAAATGCAAAAGGATACAGCAATAGGGATGAATTCCCCCAATGCAGATGCAGTGAATGGAAATCTGTCTCCTGAAAACATTGCGGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTAGATGCTGATCGTTTTTCTGAGCTCCAAGAGGCACAGGAAGACAATCAGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATATACGCTGTTCGCGAATATACTCTTTAGCTAATGATCAACTTCAACATTGGACATCTGAATTGGGCCGGTATAAAACATTGGTAGAATCCCTTCAGGCTGGCAGTGTTCATATTGCAAAATGGGAGAATGAATTAAATTTGAAATTGGAGTCTGCTGATTCTGCAAGGCAGGTCCTTGACAATTCTGACCATAGGATTGATGAACTAGAGCTCCAGTTACAGAAGTGTATTATTGAAAAGAATGATATTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCATGTTATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGCTCAATTGAAGCGATGGAAAGATGCAGCTCACGAGGCTGTATCATTACGGGAGAAAGCACATTCACTAAGAGAAGTGTTGAACATGAAGACAAGCGAACTAAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAATGCTGACTGAAAAGTTACAGAAAGAGAATCAGGAGTTAGAATTTGTTTTGGATATGTATGGCCAGGAGAATTATGATAAAAGTTATTCAGAAGTTAGAGAATCCGAAAGTAAAGCTCACTCTCAAGCTGAAATACTAAAAAATGCTTTAGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCGGCTGCTGAAGCTGAAATAGAGGACTTGAGGGCGAAGCTGGATGCATCTGAGAGGGGCATTTTGGAGCTGACTGAGGCTATTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAAGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTAAAGGCAAAACAGGTCTACAACACTCTATTGTCCCAGAAGCAGGCCTTAGCTAAACAACTTCAACAACTGAATACTTCAATAGAAAATTCAAAGGCGAGGATTGCACACAGTGAAGAACAGATGAAAGCCATTTTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCGGTGACCCTGGAATTTGCAAGGTGGGAATTGGCAGATGCGGAGAAGGAATTGAAGCTGCTCAAGTCTTCTGTCTCCTCTTCAGAGAAAGAGTACGATCAAATTCAGAAAGACACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTCAAGGAAGAAGCTCGAGGAGGAATTAAAGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTTGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCCAAGGAGGTTGTGATTGTGAAATGCTATCACTTGTTCTGCAATCAATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGTTTTGTAAAGATATGA 2646 0.3976 MENSDHDEPEKKRPHLTSVSSRTSRNSINSPTTNKTADAGVLQFQNQQLVQQIDVQKHALHGLEGKIRELKGKQSSYDDMLIALNQLWTQLVDDMILLGIQAGRGKGKDTLQYLTDIEKPKGSLPLCPAEDIFLCRLIQKDSIKGISDDELTSYVEEALALRQSSTMELLKLLKVIIDDQMERSGGIAQTLHGDLSSEDAITLMTKIDDMIKEEANNLQEVIDTLHAKHNEYTVGIQTSINECLQEKSDIKHLAGELDEIVAELEESRRKLVNLEMQKDTAIGMNSPNADAVNGNLSPENIADRTMGLRELKDSIEEAKIVDADRFSELQEAQEDNQTLTKQFQDLQNELKDDKYIRCSRIYSLANDQLQHWTSELGRYKTLVESLQAGSVHIAKWENELNLKLESADSARQVLDNSDHRIDELELQLQKCIIEKNDIEIKMEEAKQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLREVLNMKTSELKSLANKCAEQVLEIKSLKMLTEKLQKENQELEFVLDMYGQENYDKSYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERGILELTEAIKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQVYNTLLSQKQALAKQLQQLNTSIENSKARIAHSEEQMKAILSEAIKCNQEEKHLAVTLEFARWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELKELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNQCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2223 881 SMART ring_2 829 867 IPR001841 -
Pvu8g2223 881 Coils Coil 640 660 - -
Pvu8g2223 881 MobiDBLite consensus disorder prediction 1 35 - -
Pvu8g2223 881 PANTHER RING FINGER PROTEIN-RELATED 11 881 IPR013956 GO:0004842|GO:0010390
Pvu8g2223 881 Coils Coil 521 544 - -
Pvu8g2223 881 Gene3D - 740 827 - -
Pvu8g2223 881 CDD RING-HC_BRE1_like 827 868 - -
Pvu8g2223 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 11 881 - -
Pvu8g2223 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Pvu8g2223 881 SUPERFAMILY RING/U-box 828 872 - -
Pvu8g2223 881 MobiDBLite consensus disorder prediction 19 35 - -
Pvu8g2223 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Pvu8g2223 881 Coils Coil 682 723 - -
Pvu8g2223 881 Coils Coil 250 277 - -
Pvu8g2223 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 828 879 IPR013083 -
Pvu8g2223 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Pvu8g2223 881 Coils Coil 584 625 - -
Pvu8g2223 881 Coils Coil 407 448 - -
Pvu8g2223 881 Coils Coil 738 807 - -
Pvu8g2223 881 Coils Coil 329 349 - -
Pvu8g2223 881 MobiDBLite consensus disorder prediction 1 17 - -
Pvu8g2223 881 SUPERFAMILY Tropomyosin 691 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2223 Pvu-Chr8 52713778 52723108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2223 802 876 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.29e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2223 K10696 - gmx:100796610 1481.46