Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2221 ATGCCAGAAAACAGACAGGTTCACAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTGTATTATTTGAGAACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATACCACCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCACCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCTGGTTCTCCTACCTCAACAACAATTATCCCTACATCAGGTTTGCCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCTAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAAGCATTATACCCATGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACGATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGTGGGCAGGCCATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAGTATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTATTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAATCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGGCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCGGAGCCTTTACATGACTAA 1266 0.436 MPENRQVHRNADSTPSGDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQSIIPMQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERVSQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQSPETSPSKLSSDNKLQHSDAKAGTEDSSKQADTTPNSFPASSEPLHD* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2221 421 Gene3D - 41 121 - -
Pvu8g2221 421 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Pvu8g2221 421 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Pvu8g2221 421 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Pvu8g2221 421 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Pvu8g2221 421 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Pvu8g2221 421 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Pvu8g2221 421 PANTHER PROTEIN PHOSPHATASE RELATED 4 400 - -
Pvu8g2221 421 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Pvu8g2221 421 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Pvu8g2221 421 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Pvu8g2221 421 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Pvu8g2221 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Pvu8g2221 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Pvu8g2221 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Pvu8g2221 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Pvu8g2221 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 341 IPR000571 GO:0046872
Pvu8g2221 421 SUPERFAMILY CCCH zinc finger 313 341 IPR036855 GO:0046872
Pvu8g2221 421 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Pvu8g2221 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 400 - -
Pvu8g2221 421 MobiDBLite consensus disorder prediction 368 421 - -
Pvu8g2221 421 MobiDBLite consensus disorder prediction 401 415 - -
Pvu8g2221 421 SUPERFAMILY CCCH zinc finger 276 301 IPR036855 GO:0046872
Pvu8g2221 421 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Pvu8g2221 421 Gene3D - 122 168 - -
Pvu8g2221 421 MobiDBLite consensus disorder prediction 368 387 - -
Pvu8g2221 421 Gene3D - 266 344 - -
Pvu8g2221 421 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2221 Pvu-Chr8 52692810 52697339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2221 1 403 C3H Transcription Factor Family AT1G04990 48.068 1.09e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu8g2221 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2221 - - vra:106765262 851.662