Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2198 ATGGCCACAGTGGTGTGGTCCGCAGCCGCCGTAACACTGTTCCTCCTCCTCTGTTCATCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAATTGCTCCGAGCAGGAAACCAAGGCCACATATGGCAACCTCTGCAACAGTGTTCCATCATGCACGTCCTACCTCACCTTCAAATCTTCCCTCCCAGATTACACCACCCCTATCTCCATCTCTTACCTCCTCAACTCCAACACCACCGCCATCGCTGCCGCAAACAACATCACCGATGTCCAATCCATCCCCATCGACACCCTCATCACCGTCCCTATCAACTGCTCCTGCTCCGGCCTCTACTATCAGCACAACGCCTCTTACACCATCAAAACACTGGGCGAAACATACTTTTCCATCGCCAACAACACCTACCAGTCCCTCACCACGTGTCAGGCTCTCATGGACCAAAACAACTACAGCGCAGTAAACCTCGTCGCCAATCTCAACCTCCACGTGCCTCTCAGGTGCGCCTGCCCCACCCAGAAGCAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTCTCTCAAGGAGAAACGGTTTCTTCCATTGCTGAAATCTTTGGTGTTGACGAACAGAGCATCATTGAAGCAAACGAGCTTTCAAATAATTCCTTTATTTTCTACTTCACACCGATTTCAGTTCCTTTAAAAACAGAGCCTCCGACGAATTTCATGGGAGCAGCGGCTCCCCCGGAAGACTCCCCGTCGCCGCCGCCTCCGGCGGCGGACGGAGATTCGGACTCTTCCAAGAAATGGGTCATTGTCGGAATAGTGGTTGGGGTTGTTGTGGTGCTGCTTCTCTGCGCTACTCTATTTTTCTTCTGTTTCTATCGGCAGAGACGGGTACAACCGCCATCTCCGACTCCAGCGGCGAAGGCTTTCTCGGGCCCCACCCACAAAGAGAGCGAAGAAATGACTATTCCGTCGACGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATTGAGTCGTTGAGTGTGTACAAGTTTGAGGAGTTGCAGAAGGCTACGGGGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCAGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGTGATGTGTCGGGTGAGATCAACATTCTCAAGAAAATTAACCACTTCAATGTTATAAGATTGTCGGGTTTTTGTGTTCACAAAGGTGACACCTATCTCGTGTACGAGTTTGCTGAGAATGATTCTCTCGAGGATTGTCTTCATAGTGGTAGTAAGAAGTACGAGACTTCGGTGTGTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCACGATGTTGCTGACGCGCTTAATTACCTTCATAACTATACTAGTCCACCTCATGTGCATAAGAATTTGAAGAGTGGGAACGTGCTTTTAGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAACGGTGGAGGGTGAAGGGGATGATGGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCTGAGTATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCGTTTGGGGTTGTGCTTTTGGAGCTTCTTTCGGGGAGAGAGGCTGTTGGTGGGGATAAGAATGGATCTGGGGACCAGATGCTGTCGGTGACTGTGAATCAGGTGCTTGAAGGAGAGAACGTTAAAGAGAAACTTCGAGGTTTCATGGATCCAAATCTCAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATTCAAGGCCACAGATTTCTGAGGTTTTCATGATTTTGTCCAAAATTCAATCCTCTACGTTGGATTGGGATCCGTCTGATGAGCTTGAACGGTCTAGATCTGTCAGCCAAATCTCTGATAGCAGATAG 1986 0.4844 MATVVWSAAAVTLFLLLCSSIPKSESQQEYVNNKQLNCSEQETKATYGNLCNSVPSCTSYLTFKSSLPDYTTPISISYLLNSNTTAIAAANNITDVQSIPIDTLITVPINCSCSGLYYQHNASYTIKTLGETYFSIANNTYQSLTTCQALMDQNNYSAVNLVANLNLHVPLRCACPTQKQSEAGFKYLLTYLVSQGETVSSIAEIFGVDEQSIIEANELSNNSFIFYFTPISVPLKTEPPTNFMGAAAPPEDSPSPPPPAADGDSDSSKKWVIVGIVVGVVVVLLLCATLFFFCFYRQRRVQPPSPTPAAKAFSGPTHKESEEMTIPSTQSWSLSSEGIRYAIESLSVYKFEELQKATGFFSEENKIKGSVYRASFKGDYAAVKILKGDVSGEINILKKINHFNVIRLSGFCVHKGDTYLVYEFAENDSLEDCLHSGSKKYETSVCLSWVQRVHIAHDVADALNYLHNYTSPPHVHKNLKSGNVLLDGNFRAKVSNFGLARTVEGEGDDGGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFAFGVVLLELLSGREAVGGDKNGSGDQMLSVTVNQVLEGENVKEKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNSRPQISEVFMILSKIQSSTLDWDPSDELERSRSVSQISDSR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2198 661 Gene3D Transferase(Phosphotransferase) domain 1 425 652 - -
Pvu8g2198 661 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Pvu8g2198 661 ProSiteProfiles Protein kinase domain profile. 340 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2198 661 Pfam Protein kinase domain 389 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2198 661 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 652 - -
Pvu8g2198 661 SMART LysM_2 123 170 IPR018392 -
Pvu8g2198 661 SMART LysM_2 190 234 IPR018392 -
Pvu8g2198 661 MobiDBLite consensus disorder prediction 643 661 - -
Pvu8g2198 661 SUPERFAMILY Protein kinase-like (PK-like) 335 629 IPR011009 -
Pvu8g2198 661 Gene3D LysM domain 175 244 IPR036779 -
Pvu8g2198 661 PANTHER PROTEIN LYK5 15 652 - -
Pvu8g2198 661 CDD LysM 190 226 IPR018392 -
Pvu8g2198 661 MobiDBLite consensus disorder prediction 302 329 - -
Pvu8g2198 661 MobiDBLite consensus disorder prediction 641 661 - -
Pvu8g2198 661 Pfam LysM domain 191 234 IPR018392 -
Pvu8g2198 661 Pfam LysM domain 124 170 IPR018392 -
Pvu8g2198 661 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Pvu8g2198 661 MobiDBLite consensus disorder prediction 239 264 - -
Pvu8g2198 661 SUPERFAMILY LysM domain 189 234 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2198 Pvu-Chr8 52407372 52409853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2198 1 654 Receptor kinase-like Gene Family AT2G33580 52.353 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pvu8g2198 Pkinase 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2198 - - gmx:100818534 998.423