Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2127 ATGGCTATTGCAGCTCCAGGGCAATTGAACGTGAATGAATCGCCCACTTGTGGATCTAGAAGTGTTGATTGCTTCGAGAAATTGGAGCAAATTGGCGAAGGCACATATGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGTATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACATCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTCCTGAGAAAGATGAACAGGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCACGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATAAAGTGTTACATGAGACAACTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGCTCCAATCTTCTTATAGACAATGAGGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCTAATCTTACAAATCGTGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTCGGGACAACAAAGTATGGGCCTGCTGTTGATATGTGGTCAGTTGGGTGCATTTTTGCTGAGCTTCTTCAGGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATATGAGCTGTGTGGAGCACCAACTGAAATCAACTGGCCTGGGGTTTCTAAGATACCTTATTATAATAAATTTATGCCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCCGGCATTTTGATCATCATGCTCTGGAGTTGTTGGAGAAGATGTTGACACTTGATCCATCACAGAGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGACCCCAAGAGTTTACCCAAGTACGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAACAACAACGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAATGCAGCACCCACAGCAGCACACTCGTCTTCCCCCCATTCAGCAGCCTGGACAACATTCCCAAATGCGGTCAGGATCAAATCAACAAATTCATGGCTCTCAACCCCCAGTTGCTGCAGGACCTACTCATCATTATGGGAAGCCTCGAGGTCCATCTGGTGGACCAGGAAGATATCCTCCCAATGGGAACCAAGGTGGAGGATACAATCACCCAAATCGAGGAGGTCAAGGTGGTGGTGGTTATGGTACTGGACCTTATCCTCCTCAAGGGCGGGGGGCACCTTATGGGTCCAATAGCATGCCTGGTGGTGGTCCTCGTGGTGGTGGTGGTGGTGGTGGCAGCGGCTATGGAGTTGGAGCTCCGAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAACCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1563 0.4491 MAIAAPGQLNVNESPTCGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPTEINWPGVSKIPYYNKFMPTRPMKRRLREVFRHFDHHALELLEKMLTLDPSQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHTRLPPIQQPGQHSQMRSGSNQQIHGSQPPVAAGPTHHYGKPRGPSGGPGRYPPNGNQGGGYNHPNRGGQGGGGYGTGPYPPQGRGAPYGSNSMPGGGPRGGGGGGGSGYGVGAPNYPQQGGPYGGSAAGRGSNMMGGNRNQQQYGWQQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2127 520 MobiDBLite consensus disorder prediction 370 400 - -
Pvu8g2127 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Pvu8g2127 520 CDD STKc_CDK9_like 25 324 - -
Pvu8g2127 520 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2127 520 MobiDBLite consensus disorder prediction 337 366 - -
Pvu8g2127 520 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Pvu8g2127 520 MobiDBLite consensus disorder prediction 505 520 - -
Pvu8g2127 520 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2127 520 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Pvu8g2127 520 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 453 - -
Pvu8g2127 520 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2127 520 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Pvu8g2127 520 PANTHER CELL DIVISION PROTEIN KINASE 5 453 - -
Pvu8g2127 520 MobiDBLite consensus disorder prediction 335 520 - -
Pvu8g2127 520 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2127 Pvu-Chr8 51626844 51631941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2127 1 520 Core Cell Cycle Gene Families AT5G10270 75.665 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu8g2127 Pkinase 2.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2127 K08819 - gmx:100795971 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2127 8 51626844 51631941 Pvu8g2127 8 51626844 51631941 ECH
Pvu6g0212 6 9786426 9795939 Pvu8g2127 8 51626844 51631941 PCT