Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2122 ATGTCCTCATTCTCAGGTGAGGATAAAAGTAGTGATAAAAATAATCTAAAGAAGGGGCCATGGACAACAGCAGAAGATGATATATTGGCAGCATATGTCAGAAGACATGGATCGGGAAATTGGAACGTAGTGCAGAAAAATACTGGACTAGCTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGACTTGAAAACAGGTGCATTCAGCAACGAAGAACAACGCAAAGTGATTGAGTTACATGCTTTGATGGGAAATAAATGGGCTAAAATGGCACAGGAGTTGCCTGGACGAACAGATAATGAAATAAAGAACTTTTGGAACACTAGACTCAAAAAAAGGAAACGAAATGGCTTAGGAATCTACCCAGATGATATAAAACATGTGTTTAATGCTCACAACTCAGAAACTACTCTACCTACTTACACTCACTATGTCAATGACTCGGGAGTAGGCTCATCATCATGTGTACCACGTGAGGTGTTCAACAATTTCAGCACTCCAAATCAACCACTCCTTGTACCACCAATTTCTGAGGTACCTGTAGACATGCAACTGTTTGAGGTACCTAAAGAGATGATGCAACTAGAGGTACCTGAGGAGATGATGCAATTGTTCCATATACCTAAGGAGTTCCTACTTCAAGAGTATGTTGAGTTCTTGGAAGATTTCATGAATGGTGGTAACTATGAATGTTCAGGTGGCCCTTCTTCGATATCATCAAAGATGCCTCCATTGCCATCATCATGTGATGCATTACAATTTGATGAGCCAATGGTAGTAGTGAGGCAGGTTCATGAGGTTGGGACTAACCAACATTATAGGCCACGTTCTCCACGCAGCAATGGATATTTGGAGTCCATATTTTATCCACCAAACGTTTCTCAAGAACCAAAGAATTACTCGAATATGCAAGGGGATGATCCAATCAAGGATACTTTATACAGCATTATCCATCCTTTTTTCCCACGTTAA 990 0.4051 MSSFSGEDKSSDKNNLKKGPWTTAEDDILAAYVRRHGSGNWNVVQKNTGLARCGKSCRLRWTNHLRPDLKTGAFSNEEQRKVIELHALMGNKWAKMAQELPGRTDNEIKNFWNTRLKKRKRNGLGIYPDDIKHVFNAHNSETTLPTYTHYVNDSGVGSSSCVPREVFNNFSTPNQPLLVPPISEVPVDMQLFEVPKEMMQLEVPEEMMQLFHIPKEFLLQEYVEFLEDFMNGGNYECSGGPSSISSKMPPLPSSCDALQFDEPMVVVRQVHEVGTNQHYRPRSPRSNGYLESIFYPPNVSQEPKNYSNMQGDDPIKDTLYSIIHPFFPR* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2122 329 CDD SANT 73 116 IPR001005 -
Pvu8g2122 329 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g2122 329 CDD SANT 20 65 IPR001005 -
Pvu8g2122 329 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Pvu8g2122 329 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Pvu8g2122 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Pvu8g2122 329 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 229 - -
Pvu8g2122 329 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pvu8g2122 329 SMART sant 70 118 IPR001005 -
Pvu8g2122 329 SMART sant 17 67 IPR001005 -
Pvu8g2122 329 Gene3D - 10 70 - -
Pvu8g2122 329 Gene3D - 73 119 - -
Pvu8g2122 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Pvu8g2122 329 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Pvu8g2122 329 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2122 Pvu-Chr8 51587340 51588782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2122 7 216 MYB Transcription Factor Family AT2G26960 49.545 7.65e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g2122 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2122 K09422 - ccaj:109791291 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0209 6 9644568 9650318 Pvu8g2122 8 51587340 51588782 PCT