Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2119 ATGTCAAGTGGAGCAACGCACTGGTGTCATGCATGCAGACAACCAATTGTGCTTGATGGGGGAGACACTCTATGCCCTTACTGTGATGGAGGATTTATAGAAGAACTTGATGAGTTGCGAGGAGCTGCACCCCATCATACATATTCATCACAGTCGGGAGAGTTTAATCAAATGCCTGACCTTGTTGATGCTATACGTGCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGGAACTCAAATTTTGATGTTAGAGGGAGGTCAGGGTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCAACTGGCAGCCCTAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACTATGAATGATCGCCGAGGCCCACCGCCAGCCGCACGATCTTTGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATATTCGCTTAGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTGGGCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGACTAATTCCCGCAGTACAAGTTTGGGAGGAAGGAATGCCGGCACCAGCAGCAGTGGCGGAAATGATAGTAGCTCCAGGGGCAGGGAGAACAACAGCCCTCAGAACCATGGAAGGAGAAATCCATTATCATTTTTGTGGCCATTCCGCTCCTCCTCTAGCTCAAACAATAATCATTATTCTGAGACTGGGGGAAGCAGTTCTTCCACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAA 1008 0.4623 MSSGATHWCHACRQPIVLDGGDTLCPYCDGGFIEELDELRGAAPHHTYSSQSGEFNQMPDLVDAIRAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSLIDAMPTIRITQAHIRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQTNSRSTSLGGRNAGTSSSGGNDSSSRGRENNSPQNHGRRNPLSFLWPFRSSSSSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDH* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2119 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Pvu8g2119 335 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Pvu8g2119 335 MobiDBLite consensus disorder prediction 246 335 - -
Pvu8g2119 335 SUPERFAMILY RING/U-box 180 247 - -
Pvu8g2119 335 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Pvu8g2119 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 318 - -
Pvu8g2119 335 PANTHER OS03G0351800 PROTEIN 1 318 - -
Pvu8g2119 335 SMART ring_2 200 240 IPR001841 -
Pvu8g2119 335 CDD RING-H2_RNF126_like 200 241 - -
Pvu8g2119 335 Pfam Ring finger domain 199 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2119 Pvu-Chr8 51564987 51567671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2119 144 262 C3H Transcription Factor Family AT5G01980 42.149 7.99e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2119 K11982 - gmx:100813674 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2415 1 49497005 49498968 Pvu8g2119 8 51564987 51567671 ECH
Pvu8g2119 8 51564987 51567671 Pvu8g2119 8 51564987 51567671 ECH
Pvu6g0204 6 9480567 9483073 Pvu8g2119 8 51564987 51567671 PCT