Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2117 ATGAGGAAGAAACTGGACACTCGTTTCCCTGCGGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCACTTTTAGTTTCTAAAGCACTAGAGTTATTTCTACAAGATTTATGTGATCGAACATATGAGATAACTTTGAGGAGGGGAGCAAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGACTTTCTGAAAGATATTGTCAGTAAGGTTCCTGATTTAGGTGGTTCTGTTGCAAATGGTGATGATCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACGAGGAGCCCAAGAGAAGTAACAGGGCAGAGCCTGGACATACCGGTGGCAGAGGAAGGGGAAGGGGCAGAGGTAGGGGTCGTGGCCGTGGAATTAGAAATGTAGATCAAGAGATGAGTTCACATGCCAAGTGTGAGGAAGATTCTGATGCATTGAAGCAAAATGAAAAGCAGACTCAAAGCAATGAAAGCATGGAGCATGTGTCATCACCTGAAGAAGTTAAGCAGACTCTTCCGGTGAGCAAGCCGGCTCAAGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGATTTGGTAGCATCACCAACTCCTGTCCCATCTAGTTCATCTGCAAAATCAATATCAGAAGAGAAGCATGATGAATACCCTGGGTGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAATTGTAA 834 0.4197 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANGDDHTVKRRKVAEDDNDSHEEPKRSNRAEPGHTGGRGRGRGRGRGRGRGIRNVDQEMSSHAKCEEDSDALKQNEKQTQSNESMEHVSSPEEVKQTLPVSKPAQVSIRNFDLNMDPDENMDLVASPTPVPSSSSAKSISEEKHDEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEL* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2117 277 MobiDBLite consensus disorder prediction 143 168 - -
Pvu8g2117 277 MobiDBLite consensus disorder prediction 188 202 - -
Pvu8g2117 277 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Pvu8g2117 277 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Pvu8g2117 277 PANTHER HISTONE SUPERFAMILY PROTEIN 1 276 - -
Pvu8g2117 277 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Pvu8g2117 277 MobiDBLite consensus disorder prediction 98 132 - -
Pvu8g2117 277 MobiDBLite consensus disorder prediction 90 247 - -
Pvu8g2117 277 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2117 Pvu-Chr8 51549624 51553459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2117 1 266 CCAAT-HAP5 Transcription Factor Family AT3G12480 44.674 3.70e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu8g2117 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2117 K21752 - gmx:100814800 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2117 8 51549624 51553459 Pvu8g2117 8 51549624 51553459 ECH