Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2097 ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATGGTGTTCACCATGGAGTCTCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAAACATACCAACTTGTTGATGACCCTTGCACAGACCACATTGTGTCTTGGGGTGATGATGAAACCACATTTGTTGTGAGGAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCGAGCTTTGTTAGGCAGCTAAATACTTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCTCTATCAACAACATTACCATATGCATGACCAACCATCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCACTACCATCTCCACCAGGCAATGATATCTTAGCAGCTCTTTCTGAGGACAACCAAAGACTGAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATACTTCATCCAAAACCATATAAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAAGCTCCAAATTTTATCAGACCAGCTAAGAGCCATATCATGGAGAAGTCTTTGGTAAGTTCTAGTGATGAGCCTAATAGTTCTGTGAAGCTCTTTGGGGTTCCTCTTTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTCATCAATAA 810 0.4272 MAFTLDRCEDSMVFTMESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHLYQQHYHMHDQPSQLLQPDENLCWIDTPPLPSPPGNDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHISPASYEQRSSSAILKLVELESSPQAPNFIRPAKSHIMEKSLVSSSDEPNSSVKLFGVPLCGKKRLHPGNLHQ* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2097 269 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 17 260 - -
Pvu8g2097 269 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 260 IPR027725 -
Pvu8g2097 269 Gene3D - 18 117 IPR036388 -
Pvu8g2097 269 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu8g2097 269 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2097 Pvu-Chr8 51238104 51239527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2097 20 263 HSF AT1G46264 49.660 1.46e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu8g2097 HSF_DNA-bind 3.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2097 K09419 - gmx:100776060 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2097 8 51238104 51239527 Pvu8g2097 8 51238104 51239527 ECH
Pvu6g0163 6 7459944 7461399 Pvu8g2097 8 51238104 51239527 PCT