Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2079 ATGTGGCCCGGCACCAATAGGTCTATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCATCGTTCCACCACCATCACCACCACCAGCAACCGCCCCCACACGACCCTGTCATGGCGGATTCCCTCAACCCCGCCACTGCACTCGGTGTCGGCGTCATCCCCCTGCTCGCCACCACGCCGTGTCTGGAACCCGACAACTTCCTAGGAAATAGGACACGCGGTGGGGGAATTCAGTTTTGGCAAGATCAAACGCCCCATCAGAGCCATTACATGAAGAAGCAGCAGCAACAGGGGCTTCTAGACCAAAGCAACACGAGTTCTGGAAATTTGGTTCAAAACAGTGGCGGTCTAACTGCTTCGGGTACTAGTAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGTTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCAGCGGCACGCCGGAGAGAGCGCCAGCTCATGACCACGGCTACTGTGGCTGTTGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGACTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCTAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTCAAGGAGTCTTTACCTGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGAGAAGATGAGTATGCGTATCAGGCTGTGGTAAAGATTGGTGGTCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAGTGGGAGTGGAGGCAGCGGTGGGATGGGGAGAAATGGGGTTTCTTCTTCTCCAATGATGGATCCTTCTGATGTTTATGCAGCTTCTGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA 1044 0.522 MWPGTNRSINYPEMGMFVVAPASSFHHHHHHQQPPPHDPVMADSLNPATALGVGVIPLLATTPCLEPDNFLGNRTRGGGIQFWQDQTPHQSHYMKKQQQQGLLDQSNTSSGNLVQNSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTTATVAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGSGGSGGMGRNGVSSSPMMDPSDVYAASGGGLLGGSSAYGNPMN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2079 347 MobiDBLite consensus disorder prediction 184 234 - -
Pvu8g2079 347 Pfam Domain of unknown function (DUF702) 129 286 - -
Pvu8g2079 347 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 238 285 IPR006511 -
Pvu8g2079 347 MobiDBLite consensus disorder prediction 87 139 - -
Pvu8g2079 347 MobiDBLite consensus disorder prediction 300 324 - -
Pvu8g2079 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 347 IPR007818 GO:0003700|GO:0006355
Pvu8g2079 347 MobiDBLite consensus disorder prediction 87 140 - -
Pvu8g2079 347 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 131 173 IPR006510 -
Pvu8g2079 347 MobiDBLite consensus disorder prediction 184 238 - -
Pvu8g2079 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2079 Pvu-Chr8 51033340 51035981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2079 13 327 C2H2 Transcription Factor Family AT5G12330 52.553 5.92e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu8g2079 DUF702 5.1e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2079 - - gmx:100817745 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2079 8 51033340 51035981 Pvu8g2079 8 51033340 51035981 ECH
Pvu6g0319 6 12724833 12727894 Pvu8g2079 8 51033340 51035981 PCT