Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2076 ATGGAAGAATCAAGTGAACTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACCAGCCCAGCTTACGGCCTTGGAGAAATTTTATAATGAGCACAAGTACCCCACAGAGGAAATGAAATTAGAACTTGCTGAGGAGTTAGGACTGACAGAAAAGCAAATATCTGGATGGTTCTGCCACAGAAGGCTAAAGGATAAAAGATTGATGAAAGACGAAGCTGTGGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGCGGCAGTGGACTTGGGCAAGATTCTTGTGGAAGCAGTAAACATGCTGATTACAGATATCTGGATCCTAAGGAGGTTGAGAGCCATGGCTTCTACAATCACGAAATATCCGTTGCTGACATGACCCAGAGACGTAGGAACCGTTATCCTGAAAATGTTAGTGGAGTGGATGACACATCATCTGAGAGCAGCTCCTTTTTGCAAGGAAGGGCGTTTGCTCAAGGTCAGGATCCATATGATATGGAACCTTCTAGACATCTTACTCCTAACGGAGCTCTTCCACCCCTAAATCCCAAAGGTGCAGTTAACATGGGATACAAGCCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCCGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTACGAGGAAGATGGTCCACTTCTTGGTATAGAATTTGATCAGCTTCCTCCTGGGGCCTTTGAGTGCCAAACTGAAGATCCAGCTAATGAACCATTCTGTGTAGCAAATCCTCCGCTTCTGAATTCTCCAGAAATCTCTGCTGCAAAAAAACCCAATCTTAGCTCTAGATATGATTCGCATTATACTAAATTTAATTCCCAAGATTTGCATATGGGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGAAAAGAAAGCCCTTAAGAATATAAAACACAGGCAACCTTTTTACGGTTATACCACTCATGTTTCTGGAAGGACCCCTTTCCCAGATTTGTATGAAGACTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAATGAGCTATAAGCATGGGGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCATAGTGATCACTTTGAAGAGAAGCTTGCGGTTAAGCCAAAAGACTTGATGCTGCATGGTTATGATAAGATCAATACAAAGAGAATACAAAGGAGTGGACATGTAAAATCTAAACCTTCTAGTTCAATTCGTAATTCCCGTGTTCACATGGATACTGAAGAAAGGGGATTATCTGCTAGGATGGGAAAGCAAGAGATGTTTAAGGTGGACCAGAAAGCAAAAAATACGTACCGCGATGTAGATGGAGCAGGGAGGCTTTCAAATGAAATCATGAGCTTGCAAAGCGAGCTAAAGTTGACATGCTTCAACAATACCATGTGA 1464 0.4201 MEESSELQSEENKVSNEKNKKRKLKTPAQLTALEKFYNEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDPKEVESHGFYNHEISVADMTQRRRNRYPENVSGVDDTSSESSSFLQGRAFAQGQDPYDMEPSRHLTPNGALPPLNPKGAVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYEEDGPLLGIEFDQLPPGAFECQTEDPANEPFCVANPPLLNSPEISAAKKPNLSSRYDSHYTKFNSQDLHMGADFGSLHESDFQDKQEKKALKNIKHRQPFYGYTTHVSGRTPFPDLYEDSTGEASGYNSAKNHRMSYKHGVEGMRSDSASNHSDHFEEKLAVKPKDLMLHGYDKINTKRIQRSGHVKSKPSSSIRNSRVHMDTEERGLSARMGKQEMFKVDQKAKNTYRDVDGAGRLSNEIMSLQSELKLTCFNNTM* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2076 487 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 471 - -
Pvu8g2076 487 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Pvu8g2076 487 Gene3D - 8 92 - -
Pvu8g2076 487 MobiDBLite consensus disorder prediction 82 109 - -
Pvu8g2076 487 MobiDBLite consensus disorder prediction 7 28 - -
Pvu8g2076 487 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Pvu8g2076 487 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Pvu8g2076 487 CDD homeodomain 20 75 IPR001356 GO:0003677
Pvu8g2076 487 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 471 - -
Pvu8g2076 487 MobiDBLite consensus disorder prediction 88 106 - -
Pvu8g2076 487 MobiDBLite consensus disorder prediction 411 437 - -
Pvu8g2076 487 SMART HOX_1 18 80 IPR001356 GO:0003677
Pvu8g2076 487 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2076 Pvu-Chr8 50964671 50969907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2076 3 265 Homeobox Transcription Factor Family AT4G03250 54.924 1.78e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu8g2076 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2076 - - gmx:100803515 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2076 8 50964671 50969907 Pvu8g2076 8 50964671 50969907 ECH
Pvu6g0316 6 12598912 12604241 Pvu8g2076 8 50964671 50969907 PCT