Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2075 ATGGAGGGGTTCGGAATGGCTTCGGATCTTAGCAGAACCGGCCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGGAGAAGGGGAAAACCCAAGTTTTGCCCCTTTCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCCAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGACAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCATCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCTGAGGCTAATAGTCCTCGAACCTACACTAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGAAAAAGGATAGCGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCTGTCCCTCAAAAGTCTTTCTTTCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCGGGAGGATCAGACAGTATGCATGGTCACATGAAAACAATGGGTATGGATGCTTTTAGAGTGAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCACCGAGTTGGGAGTGGTTTGGGTGTGAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTTCAGAATATTGCTTGTGGTGGACGACATGCAGCCCTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGTGGCAGACTCGGACACGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGATGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTCTATACGTGGGGTAATGGTACATACAATTATGGACTTCTAGGACACGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTGCCGAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGGGTTTGGCATTCGGCTGCAGTCGTAGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTTCCTACGTGTGTTGCCCTCATTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGCCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAGGCTACCAATTCGTGTTGAAGGGAAACTTTCGTCAAAAAGTTTCGTGGAGGAGATAGCATGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGAAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTGGTTGAAGCTCTGAAGGACAAAGATGTCAAGAGTATTGCTTGCGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCCGGTGTTGACCAGTCTATGTGTACAGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGCGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTTAGGAAAACAGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCGTGGGTCGCTGGAGTTAATTGATAAGGATGATAAATTAGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTACCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCAACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGTACCTGCTAGGAATGTGAAATCACCGTCTATTGCTTCTTTTGGTTCCAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAACATCAAGTCCAGAGGCAGATTTAACTGCATCAAACAACCAGTTACTCTCAAATGGATCAAGCACAGTTAGTAACCGAAGTGCAGGTCACAATAAACAGGGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTACTGTCGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3321 0.4378 MEGFGMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKSFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSGLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGRLPIRVEGKLSSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCTGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNRGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVVPARNVKSPSIASFGSNPCSNDVNYASIDRLNIQTSSPEADLTASNNQLLSNGSSTVSNRSAGHNKQGQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVLMIDKSTVGVGSEDLAH* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2075 1106 SUPERFAMILY FYVE/PHD zinc finger 655 726 IPR011011 -
Pvu8g2075 1106 SUPERFAMILY PH domain-like 19 127 - -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Pvu8g2075 1106 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 833 862 - -
Pvu8g2075 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 988 1020 - -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Pvu8g2075 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
Pvu8g2075 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1092 - -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 988 1035 - -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 788 802 - -
Pvu8g2075 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 549 599 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Pvu8g2075 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Pvu8g2075 1106 Pfam Transcription factor BRX N-terminal domain 916 944 IPR027988 -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Pvu8g2075 1106 Pfam Unstructured region between BRX_N and BRX domain 957 1026 - -
Pvu8g2075 1106 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Pvu8g2075 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Pvu8g2075 1106 CDD PH_PLC_plant-like 18 128 - -
Pvu8g2075 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 728 IPR013083 -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 602 IPR000408 -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 779 802 - -
Pvu8g2075 1106 Gene3D - 497 667 IPR009091 -
Pvu8g2075 1106 Gene3D - 233 496 IPR009091 -
Pvu8g2075 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1092 - -
Pvu8g2075 1106 SMART fyve_4 653 722 IPR000306 GO:0046872
Pvu8g2075 1106 SUPERFAMILY RCC1/BLIP-II 265 656 IPR009091 -
Pvu8g2075 1106 Coils Coil 865 906 - -
Pvu8g2075 1106 Gene3D - 19 136 IPR011993 -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 142 170 - -
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 136 190 - -
Pvu8g2075 1106 CDD FYVE_like_SF 664 717 - -
Pvu8g2075 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Pvu8g2075 1106 Pfam FYVE zinc finger 655 721 IPR000306 GO:0046872
Pvu8g2075 1106 MobiDBLite consensus disorder prediction 1021 1035 - -
Pvu8g2075 1106 Coils Coil 921 941 - -
Pvu8g2075 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2075 Pvu-Chr8 50938547 50946789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2075 925 1097 Major Intrinsic Protein MIP AT1G31880 31.551 5.38e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2075 - - gmx:100802464 2009.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2075 8 50938547 50946789 Pvu8g2075 8 50938547 50946789 ECH
Pvu6g0315 6 12575212 12588913 Pvu8g2075 8 50938547 50946789 PCT