Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2069 ATGCTAACCGCAATCCTCAGAAGAACTTGTTCCACCCTCTCAAGGCGCGCTTTCCCCGCCGTCATAATCTCCGCCAGCAACGACTTCCGGCCACTCTCCGCCCCCTTCATTTCCAGAACCTTCCACTCCAAACCCGGTCCGTTGAATTTCCGTTCTTCTTTATATCATCGTGCGGAATATGCTGTTGACGATTTCCCTTACGAAGAAGGCTCTAAAGGGAACGCCGACGAAGGCCTCGAAATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCAGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGGGGTAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACGAGAGAGCTTGCTAAGCAGGTTGAGAAGGAGTTCTATGAGTCGGCACCTAACTTGGATACAATTTGTGTTTATGGGGGTACGCCAATCTCTAAGCAAATGAGGCAGCTCGATTACGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATCTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAGGAAGTGGAGAAGATCTTGGAAAGATTGCCCCTCAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAACAGATTTCACGCAATTACCTGAATGATCCCCTGACCATTGATCTAGTTGGAGATTCTGATCAGAAGTTAGCAGATGGAATTTCACTGTACTCCATTGCATCTGACTCGTATGTTAAAGCGGGAATTCTTGCACAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCAGACCGATTATCATTTACCATGGGAAAAAGTGTTCAATGCGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAGACTCTTGCTGGCTTCAGAAATGGCCATTTTAGTGTTTTGGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGAACTTCCCAATTCTTCAGAGATATTTGTTCATAGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGCTGTAAATTTACAGAGCTACCAAGGATTGCTGTTGATAGTGCATCTATGGACGCGATTGGCATGGGCGGTGGGCGATTCGGCTCTTCTGGAGGTATAAGGGATCGTCGATATGGTGATACAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGTGGCTACAATAGTGGATTTGGCCGCCCTAGCTTTGGAGATTCTGGTGAAAGGTTTGGTGGACAGAGTTATAATCGTTTTGGTGGCTCTGGTTCCAGTCAATCAGGAGGGGGCTTTTCTGGTAGTTCATCTGGTGAAATGAGTAGATATAGTGGATCAAACTCTGGTAGGTTTGGCTCATCTGGTGGCTTTGGCTCTGGTCAATCAGGAAGTAGATCTGGTCGATCATCTAGTGGGTCTAGGTTTAGTCGTTCAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCGGGTGGTTTTGGAGAACTTGGCTCAGGCCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA 1860 0.4618 MLTAILRRTCSTLSRRAFPAVIISASNDFRPLSAPFISRTFHSKPGPLNFRSSLYHRAEYAVDDFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEEVEKILERLPLKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDSYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSFTMGKSVQCEALHGDISQAQREKTLAGFRNGHFSVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCKFTELPRIAVDSASMDAIGMGGGRFGSSGGIRDRRYGDTGFGRGPGSGRSGGYNSGFGRPSFGDSGERFGGQSYNRFGGSGSSQSGGGFSGSSSGEMSRYSGSNSGRFGSSGGFGSGQSGSRSGRSSSGSRFSRSDDFGGFGGSDRSGGFGELGSGQSSGFGDSRGSNQNNRRPF* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2069 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 439 IPR027417 -
Pvu8g2069 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 32 519 - -
Pvu8g2069 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 457 IPR001650 -
Pvu8g2069 619 MobiDBLite consensus disorder prediction 467 619 - -
Pvu8g2069 619 CDD SF2_C_DEAD 310 427 - -
Pvu8g2069 619 MobiDBLite consensus disorder prediction 519 578 - -
Pvu8g2069 619 SMART helicmild6 338 418 IPR001650 -
Pvu8g2069 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Pvu8g2069 619 Gene3D - 305 461 IPR027417 -
Pvu8g2069 619 Pfam DEAD/DEAH box helicase 103 272 IPR011545 GO:0003676|GO:0005524
Pvu8g2069 619 Pfam Helicase conserved C-terminal domain 312 418 IPR001650 -
Pvu8g2069 619 SMART ultradead3 98 301 IPR014001 -
Pvu8g2069 619 Gene3D - 80 288 IPR027417 -
Pvu8g2069 619 MobiDBLite consensus disorder prediction 595 619 - -
Pvu8g2069 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 284 IPR014001 -
Pvu8g2069 619 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 32 519 - -
Pvu8g2069 619 CDD DEADc 90 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2069 Pvu-Chr8 50870779 50875386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2069 84 455 Eukaryotic Initiation Factors Gene Family AT3G19760 32.713 2.87e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2069 - - gmx:100786041 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0304 6 12318596 12325526 Pvu8g2069 8 50870779 50875386 PCT