Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2047 ATGAAGCTTTCTTCTTCTGGATTTAATCAACCGGGGGAGGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGTCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAACTTATCTGTCAGCTTCACAATGTAACAATGCATGCGGATGCTGAAACAGATGAAGTATATGCACAAATCACTCTGCAACCTCTAAATCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCTCTCCCAACAAGCAACCAACCAACTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAACCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTCACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCCGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTTTTGGGCATAAGGCGGGCAAATCGTCCACAGACTATAATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAACAGTCGCTTTACTATATTCTATAATCCAAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGTCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGCTGAGGCGTCCTTGGCCAACGGGCCTACCTTCTTTGTATGGTCTTAAGGATGGAGACATGGGACTTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTGGGTGTTGCACCGTGGATGCAACCTAAACTTGACTCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACTTCTGCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACATAGGCAAGTATTACCACAGTCTCAGCCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCTCCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAACATCATCTCTCCTTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACACATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCGTTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAATGGATCCAATTCCATTATATCTTCTGCATCCATCCTACCCAAGCAAATGACAGTTGAATCTCAGCTTCCGTCTGCTGCTCCTCAATGCGTGTTGCCTCAGGTGGAGAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATATCATGGTGCTGCTGATCCTCAGAGCAATCTGTTATTTGGAATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAATGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGAGGTGCTACAGGCACCGATTTCCCCTTAAGTTCAAACATGACAACATCGAGTTGTATGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTGGAAGTGCAGCAAATGGGCAAAGGTGTTAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGTGAATCAACAAGAGTTGAGAAGTTCCAGAAATGGTATGGCATCAATGGGGTCTTTTCACTACTAG 2685 0.4473 MKLSSSGFNQPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQITLQPLNPQEQKEVYLMPAELGSPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGLGSPFMWLQGGLGDQGMQSLNFQGLGVAPWMQPKLDSSIPGLQPELYQAMTSAAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVHRQVLPQSQPQSTLLQNFQENQVPPQSQLLQQQLHRYHPYSDQRQQQQLKNLPVQQQLPNIISPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSIISSASILPKQMTVESQLPSAAPQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCMDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYVNQQELRSSRNGMASMGSFHY* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2047 894 Gene3D - 127 230 IPR015300 -
Pvu8g2047 894 SUPERFAMILY DNA-binding pseudobarrel domain 115 258 IPR015300 -
Pvu8g2047 894 Gene3D - 293 365 - -
Pvu8g2047 894 MobiDBLite consensus disorder prediction 849 873 - -
Pvu8g2047 894 Pfam AUX/IAA family 747 842 IPR033389 -
Pvu8g2047 894 CDD B3_DNA 128 229 IPR003340 GO:0003677
Pvu8g2047 894 Gene3D - 754 849 - -
Pvu8g2047 894 MobiDBLite consensus disorder prediction 454 486 - -
Pvu8g2047 894 SMART B3_2 129 231 IPR003340 GO:0003677
Pvu8g2047 894 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Pvu8g2047 894 SUPERFAMILY CAD & PB1 domains 751 834 - -
Pvu8g2047 894 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Pvu8g2047 894 ProSiteProfiles PB1 domain profile. 758 844 IPR000270 GO:0005515
Pvu8g2047 894 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu8g2047 894 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu8g2047 894 PANTHER AUXIN RESPONSE FACTOR 6 1 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2047 Pvu-Chr8 50522168 50530324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2047 1 471 B3 DNA Binding Superfamily AT1G30330 85.474 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu8g2047 AUX_IAA 1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2047 - - gmx:100810798 1652.49