Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2039 ATGAACAACACTATTCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCAAGAACACGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAACAAAATAGGAGGCTACTTGGGAATTCATCCAACATGAGACAGGTGCAGAAAACTGCTCAATCGACATTAAGGGCCAGTGGGCCGTATGAGAATTCAAACAACTTGGATCAAGAAGAGGCAGCCCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACATGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTAGTGGCCCCCATCATCCTCCTTCACCTTCACAACCACTACCATCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGAGAATCCTATGCCTGCTTCAGGATTTCATGTTGCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACATGTTTCTTCAACATCTCAAAAACCTAGAGCTAAGCTCTCACAAAGTGAGGGTAGAGAGCCCTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACTGGGTTTCAAGCAGTGGCGTTTGGACCACCACTAATAATATCACTTTATCTTCCGAGCCTGAAGCTGTAGATTGTATCCAGAGACCAATTCCTAGGAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGACCATGGCCAAAAGAGAAAAGTGACAGAAGAAGAAGCAGTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGGACAAGGCCTTCCAGAAAGAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAGCAACTTATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTGCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATAGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCACATGCTCAACCCATGTCTCTCACTCACCCTCAGATGCCAAACCAGAATCTAATGTGCCAAAATCCAGTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAACAATACGCACGTTACATGGGTTACCATCTCCTGCATAGTGCCTCTCAGTCAATGAATAATGTATTGAGATATGGTTCCCAAGCAATGCAACATAGTGAAACAATGATTGCAGGAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTTGATGATGCTGTTAGTGGCAAAACTGGTTCTTCCACCTTTAACTGA 1650 0.4412 MNNTIPGWDFESDTCLTNQRKPTGLDQEHVELLWQNGQVVMHSQQNRRLLGNSSNMRQVQKTAQSTLRASGPYENSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYMPIRQLEEEKFANIFSPSGPHHPPSPSQPLPSNMKSSCVQGLQENPMPASGFHVADSSQKINDFGASRKVLNFPHFSAHVSSTSQKPRAKLSQSEGREPSVITVGSSHCGSNHIPQDQDVNWVSSSGVWTTTNNITLSSEPEAVDCIQRPIPRSERGKSEMIEPTVTSSSGGSGSTGIGRTCSLSTRDHGQKRKVTEEEAVEEQSEATELKSADGNKLSQRTRPSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPHAQPMSLTHPQMPNQNLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLLHSASQSMNNVLRYGSQAMQHSETMIAGGNNSSGPMSGTANVDDAVSGKTGSSTFN* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2039 549 MobiDBLite consensus disorder prediction 197 223 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 271 352 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 518 549 - -
Pvu8g2039 549 Coils Coil 311 331 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 132 156 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 279 303 - -
Pvu8g2039 549 SMART finulus 353 402 IPR011598 GO:0046983
Pvu8g2039 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 409 IPR036638 GO:0046983
Pvu8g2039 549 Gene3D - 343 403 IPR036638 GO:0046983
Pvu8g2039 549 PANTHER TRANSCRIPTION FACTOR PIF5 1 525 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 304 328 - -
Pvu8g2039 549 MobiDBLite consensus disorder prediction 49 80 - -
Pvu8g2039 549 CDD bHLH_AtPIF_like 347 410 - -
Pvu8g2039 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Pvu8g2039 549 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 525 IPR031066 -
Pvu8g2039 549 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2039 Pvu-Chr8 50459809 50465161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2039 7 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.950 2.13e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g2039 HLH 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2039 K16189 - gmx:100811777 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0246 6 10710838 10714666 Pvu8g2039 8 50459809 50465161 PCT
Pvu6g0300 6 12101442 12107322 Pvu8g2039 8 50459809 50465161 PCT