Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2030 ATGGACAACTCAAATGATTCATCATCATCCTTGACTTTTGTATCATCTCAACTTTCACATGGTTCTAGTAATCACAACGTGTCTTCCTTTACCAGCAATGAGCATGGGGCAAATATTGAAATTTTGACTCTGAATAAGCTCAGTGGAAGCCTTGAGAAGTTACTGATTGATGCTGAGTATGACTATAGTGATGCTGAGATTGTCGTTGAAGACATATCTGTGGGTGTTCATCGCTGTATATTGGCCTCGCGTAGTCCTTTTTTTCATGAACTTTTTAAGAAAGGAACGGATGGATCAGGGAAGGAAGGAAAACCAAGGTATCTCATGTCAGAATTGGTGCCTTATGGCGCAGTTGGATATGAAGCTTTCCAAGTTTTCTTGTACTATTTGTACACTGGAAGGCTAAAAGATTCACCAACAGAAGTGACAACATGTGTTGGTGAAACATGTATCCATGATGCATGTCGCCCTGCTATCGATTATGCGTTGGAGCTGATGTATGCTTCTGCCGCGTTTCTGATGAAAGAGCTGGTTTTACTTTTTCAGCGGCAACTGCTAAACTTTGTTGATAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTATGGCTGCTTTCAACTGCCAACTAGAGCAGCTTCTCTCTCGGTGCATTCACAAAGTAGCAAGCTCTGACTTTGACAGCATATCTTTGGAAAAAGAGCTCCCTCATGAAGTTGTGACTGAAATCAAATCGTGCCGTCTCTCATTTCAGCCAGAATCCGCAGCTGATGCAATGGAAGTGGAGCCTTTGAGTGAAAAGAGTATCATGAGAATCCATAAAGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCAAGGGTCACCCTAGATGATGCATATGCCCTGCACTATGCCTGTGCCTATAGTGATTCTAAGGTTATTCAAGAACTTCTTGGTCTAGGTATGGCTGATATTCTTCGTAGAAATTCTCGAGGATACACGGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTAGCACTGCTGAATAAAGGGGCATGTGCAACAGATACCACTCCAGATGGTCAAACGGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAGTGAAGTGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTGGAGAGGGAGATGAGAAGAAGTTCTATGACTGTGAGTATGTCTGTTTCATCCCAGTTAACAGCTGATGATTTGCACATAAGACTGGATTACCTTGAAAATAGAGTTACATTTGCTCGGTTGTTGTATCCTGCTGAGGCTAAGGTAGCCATTGAGAATGCTGAGGCAGATTCGTCATCACTGCACGCAAACGCATCAGCTTTGGAGGGCGCAAATGGAAATCTAAAAGTTGATCTAAATGAATCTCCCTCTGCTCGAACCAGAAAACTTCAGTTAAGATTGCATGCCCTTATGAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGTTCTGAAGTGCTTGATAAGTTTCTGGAAGATGATATGCCAGATGTGTTCTTCCTAGAAAAGGGCAGTGAAGAAGAGCAGAGAATGAAGAAAGCACGGTTCATGGAACTTAAAGATGATGTGCAGAAAGCATTTCACAAAGATATGGCTGAAAATAACCATACAGCTTTTTCATCTTCAGTGTCCTCCTCATCATCTTCTACTCGGAGGGAAAGTCTTAACCACAGAGTGAGGAAAAAATGA 1767 0.4228 MDNSNDSSSSLTFVSSQLSHGSSNHNVSSFTSNEHGANIEILTLNKLSGSLEKLLIDAEYDYSDAEIVVEDISVGVHRCILASRSPFFHELFKKGTDGSGKEGKPRYLMSELVPYGAVGYEAFQVFLYYLYTGRLKDSPTEVTTCVGETCIHDACRPAIDYALELMYASAAFLMKELVLLFQRQLLNFVDKALVEDVIPILMAAFNCQLEQLLSRCIHKVASSDFDSISLEKELPHEVVTEIKSCRLSFQPESAADAMEVEPLSEKSIMRIHKALDSDDVELLKLLLNESRVTLDDAYALHYACAYSDSKVIQELLGLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGACATDTTPDGQTALSICQRLTRRKDYHEKTVKCKESNKDRLCVDVLEREMRRSSMTVSMSVSSQLTADDLHIRLDYLENRVTFARLLYPAEAKVAIENAEADSSSLHANASALEGANGNLKVDLNESPSARTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEEEQRMKKARFMELKDDVQKAFHKDMAENNHTAFSSSVSSSSSSTRRESLNHRVRKK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2030 588 Gene3D Potassium Channel Kv1.1; Chain A 33 221 IPR011333 -
Pvu8g2030 588 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Pvu8g2030 588 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Pvu8g2030 588 Pfam Ankyrin repeats (3 copies) 272 357 IPR002110 GO:0005515
Pvu8g2030 588 PANTHER REGULATORY PROTEIN NPR3 1 586 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pvu8g2030 588 SMART ANK_2a 295 325 IPR002110 GO:0005515
Pvu8g2030 588 SMART ANK_2a 266 294 IPR002110 GO:0005515
Pvu8g2030 588 SMART ANK_2a 329 358 IPR002110 GO:0005515
Pvu8g2030 588 MobiDBLite consensus disorder prediction 555 588 - -
Pvu8g2030 588 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Pvu8g2030 588 SMART BTB_4 63 189 IPR000210 GO:0005515
Pvu8g2030 588 Gene3D - 263 404 IPR036770 -
Pvu8g2030 588 CDD BTB_POZ_NPR_plant 45 189 - -
Pvu8g2030 588 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 586 - -
Pvu8g2030 588 Pfam BTB/POZ domain 60 140 IPR000210 GO:0005515
Pvu8g2030 588 MobiDBLite consensus disorder prediction 560 578 - -
Pvu8g2030 588 SUPERFAMILY POZ domain 60 187 IPR011333 -
Pvu8g2030 588 Pfam NPR1/NIM1 like defence protein C terminal 371 572 IPR021094 -
Pvu8g2030 588 SUPERFAMILY Ankyrin repeat 264 372 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2030 Pvu-Chr8 50360565 50365097 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu8g2030 NPR1_like_C 7.4e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2030 K14508 - gmx:100814739 973.385