Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2024 ATGGGAAAACATGGTGAGGAAGAAGAGCGTCTTGGTTTCACCTATGATGTGTTCATCAGTTTTAGAGGGGAAGATACAAGGAACACTTTTATAGGGCATCTGCGTAGAGAGTTGGGTAGGATGGGAATAAAAAGTTTCAATGATGATAGGAATATGAGAATAGGGGAAAGTCTTTCACCTGCTCTGTCGAAGGCCATTGAAGAATCTAAGATTTTCATAGTTGTGTTTTCTGAGAAGTATGCATCTTCCACATGGTGTCTGGATGAACTTGTTAGGATCATAGAACGCAGCAAGATGAAGAAGAAGATGCATCTTGTTTACCCAGTGTTTTACCATGTAGATCCCTCAGATATAGAGCACGAGAGAAATAGCTTCGGAAAACACATGAAGGCACATGAAAAGGAGATTGGAAAAGAATCACAGAGAATGCAGGATTGGAGGTCAGCCTTCTCTCAAGCAGCAGTTGACTTCCAAGGGAGGCATATTAGCACCGGTGGTCAAAACCCTGTTGGACTTGACGCCTGCATAGAAGAAGTTATGTCCCTTTTGGAAATGAAGCCTTATGATAAAACTGTAAATATGTTGGGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCATAGCTTTGTATAACACAATTTTGCAACACTTTGATGCTGCAAGTTTTCTTTCCGATGTTAGAGAAAAATCAAGCAGAATCAATGGCATTAAAGATCTACAAAAGACACTTTTATCTGAGATGTTTGAGGAGTTGGAAACTGAATTGGGAAGTACAAGTAAAGGAATGACTGAAATAGAAGAAAAGCTTCAGAAAAAGAAAGTTCTTTTGGTTCTTGATGACGTTGGTGATAAAGACCAGTTAGAAAATTTGGCAGGAGGGGGTAAATGGTTTGGTCCAGGTAGTAGAATCATTATAACGACAAGGGAAAAAGATGTGCTAATTTCTCACCAAGTTAAAAATATGTATGAAATGAAGGAACTTGATGACCTACATTCTTTAGAGCTATTTTGTTGGAATGCCTTCAGACAAAGTTATCCTAAAACAGGTTTTGAAGATGTGTCTCTGCGTGCTGTAGATTACGCCAAAGGTCTTCCACTGGCTTTAAAAAGGATAGGCTCTGATTTAGCTACTTTTCATGAAAGTTTAGAAGATTGGGAAATGGCAATGGAAGAATATGAGAGGACTCCAAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGATAAATTGGATGATAAGGCCAAACAAATTTCCTTGTTCATCAGTTTTAGAGGGGAAGATACAAGGTACACTTTTATAGGGCATCTGCGTAGAGAGTTGGGTAGGAGGGGAATAAAAAGTTTCAATGATGATAGGAATATGAGGATAGGGGAAAGTCTTCCACCTGCTCTGTCGAAGGCCATTGAAGAATCTAAGATTTTCATCGTTGTGTTTTCTGAGAACTATGCATCTTCTACACGGTGTCTGGATGAACTTGTTAGGATCATAGAACGCAGCAAAATGAAGGAGAAGAAGCAGCTTGTTTACCCAGTGTTTTACCATGTAGATCCCTCAGATATACGGCACGAGAGAAACAGCTTCGGAAAACACATGAAGGCACATGAACATGAGATTGGAAAAGAATCACAGAAAATGCAGGCTTGGAGGTCAGCCTTGTCTCAAGCTTTTGACTTCCCAGGGAGGCATATTATTACCACCGGGTATGTATAA 1722 0.3955 MGKHGEEEERLGFTYDVFISFRGEDTRNTFIGHLRRELGRMGIKSFNDDRNMRIGESLSPALSKAIEESKIFIVVFSEKYASSTWCLDELVRIIERSKMKKKMHLVYPVFYHVDPSDIEHERNSFGKHMKAHEKEIGKESQRMQDWRSAFSQAAVDFQGRHISTGGQNPVGLDACIEEVMSLLEMKPYDKTVNMLGIYGLGGIGKTELAIALYNTILQHFDAASFLSDVREKSSRINGIKDLQKTLLSEMFEELETELGSTSKGMTEIEEKLQKKKVLLVLDDVGDKDQLENLAGGGKWFGPGSRIIITTREKDVLISHQVKNMYEMKELDDLHSLELFCWNAFRQSYPKTGFEDVSLRAVDYAKGLPLALKRIGSDLATFHESLEDWEMAMEEYERTPNKKIQDVLKISYDKLDDKAKQISLFISFRGEDTRYTFIGHLRRELGRRGIKSFNDDRNMRIGESLPPALSKAIEESKIFIVVFSENYASSTRCLDELVRIIERSKMKEKKQLVYPVFYHVDPSDIRHERNSFGKHMKAHEHEIGKESQKMQAWRSALSQAFDFPGRHIITTGYV* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2024 573 ProSiteProfiles TIR domain profile. 13 153 IPR000157 GO:0007165
Pvu8g2024 573 Gene3D - 3 153 IPR035897 -
Pvu8g2024 573 ProSiteProfiles TIR domain profile. 419 560 IPR000157 GO:0007165
Pvu8g2024 573 SUPERFAMILY Toll/Interleukin receptor TIR domain 411 562 IPR035897 -
Pvu8g2024 573 Coils Coil 378 398 - -
Pvu8g2024 573 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 427 567 IPR044974 GO:0006952
Pvu8g2024 573 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 426 IPR044974 GO:0006952
Pvu8g2024 573 Pfam NB-ARC domain 179 414 IPR002182 GO:0043531
Pvu8g2024 573 SMART till_3 420 562 IPR000157 GO:0007165
Pvu8g2024 573 SMART till_3 14 160 IPR000157 GO:0007165
Pvu8g2024 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 424 IPR027417 -
Pvu8g2024 573 Pfam TIR domain 15 159 IPR000157 GO:0007165
Pvu8g2024 573 Pfam TIR domain 423 558 IPR000157 GO:0007165
Pvu8g2024 573 Gene3D - 418 572 IPR035897 -
Pvu8g2024 573 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Pvu8g2024 573 Gene3D - 158 325 IPR027417 -
Pvu8g2024 573 PRINTS Disease resistance protein signature 194 209 - -
Pvu8g2024 573 PRINTS Disease resistance protein signature 271 285 - -
Pvu8g2024 573 PRINTS Disease resistance protein signature 364 378 - -
Pvu8g2024 573 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 17 426 - -
Pvu8g2024 573 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 427 567 - -
Pvu8g2024 573 Gene3D - 329 415 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2024 Pvu-Chr8 50269876 50275878 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2024 170 436 WRKY Transcription Factor Family AT5G45050 32.714 2.96e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2024 - - pvu:PHAVU_008G195300g 1104.74