Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2017 ATGGATGTGCCCAAGTTACACAACACTGATGATGAGGACAAGAAAGAAGATGAAGTTGTGCTTCCAGGGTTTAGATTCCACCCAACAGATGAAGAGCTTGTGGGGTTTTATCTCAGGCGAAAGGTGGAGAAAAAGCCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGCAAGTTCTGTGGGGGAGAAGGAATGGTACTTCTTCTGCATAAGAGGGAGAAAGTACAGGAACAGCATAAGGCCTAATAGAGTAACAGGATCTGGATTTTGGAAAGCCACAGGGATTGATAAACCTATATACTGTGTTAAAGAACCTCATGAATGCATTGGTCTGAAGAAATCATTGGTGTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCACCCAATGGAAAATCTACCAATACTCCACAACCTAATCACATTCAAGAAGCTGAAGTGTGGACGCTGTGTCGAATATTGAAACGAGTCCCATCATACAAGAAGTATACACCAAATTTGAAAGACTCAGCCACAAACTCTTCAAGTTCCAAAACATGCAGTTTAGAATCTGACAACAGCAAGCCATACTTGACTTTCACAGACTCACCATCATCACTGCTCCTTCAACAGAATGAAATTAAGAAACCAGTTTTTGGACATGGTCATCTACCTCACCCTCCAACATCCTTCTCTTACTCAACTTTTTGGAATCATCATCAGAATCTGGAATTTGCTCATGAGAATTGGGATGATCTTACATCTGTGGTTCAGTTTGCTGTTGATCCAACCAGAGTTTCTCATCATTGTAAAGACTCTAATAAATTTTGA 873 0.4066 MDVPKLHNTDDEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSTNTPQPNHIQEAEVWTLCRILKRVPSYKKYTPNLKDSATNSSSSKTCSLESDNSKPYLTFTDSPSSLLLQQNEIKKPVFGHGHLPHPPTSFSYSTFWNHHQNLEFAHENWDDLTSVVQFAVDPTRVSHHCKDSNKF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2017 290 SUPERFAMILY NAC domain 19 176 IPR036093 GO:0003677|GO:0006355
Pvu8g2017 290 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Pvu8g2017 290 Gene3D NAC domain 29 180 IPR036093 GO:0003677|GO:0006355
Pvu8g2017 290 PANTHER - 4 289 - -
Pvu8g2017 290 MobiDBLite consensus disorder prediction 186 206 - -
Pvu8g2017 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 289 - -
Pvu8g2017 290 ProSiteProfiles NAC domain profile. 20 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2017 Pvu-Chr8 50148719 50151568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2017 10 249 NAC Transcription Factor Family AT5G39820 48.134 3.63e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu8g2017 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2017 - - gmx:100784323 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0240 6 10522343 10526782 Pvu8g2017 8 50148719 50151568 PCT